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comparison data_manager/data_manager_ceas_fetch_annotations.py @ 1:df9033b88b53 draft

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Fix data manager for Galaxy version v16.04 (was failing with import error for 'six' package)
author pjbriggs
date Thu, 11 Aug 2016 04:16:49 -0400
parents f411ce97a351
children
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0:f411ce97a351 1:df9033b88b53
8 import optparse 8 import optparse
9 import urllib2 9 import urllib2
10 import gzip 10 import gzip
11 import shutil 11 import shutil
12 12
13 from galaxy.util.json import from_json_string, to_json_string 13 # Convenience functions mapping to JSON conversion
14 # (this idiom borrowed from lib/galaxy/utils/json.py)
15 import json
16 to_json_string = json.dumps
17 from_json_string = json.loads
14 18
15 # Download file from specified URL and put into local subdir 19 # Download file from specified URL and put into local subdir
16 20
17 if __name__ == '__main__': 21 if __name__ == '__main__':
18 #Parse Command Line 22 #Parse Command Line