Mercurial > repos > pjbriggs > macs21
diff README.rst @ 3:4124781932db draft
Updated to MACS 2.1.1 and use conda for dependency resolution.
author | pjbriggs |
---|---|
date | Tue, 20 Mar 2018 11:25:04 -0400 |
parents | 00d73c812399 |
children | 11cf21ee4242 |
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--- a/README.rst Wed Mar 22 11:36:07 2017 -0400 +++ b/README.rst Tue Mar 20 11:25:04 2018 -0400 @@ -1,7 +1,7 @@ -MACS21: Model-based Analysis of ChIP-Seq (MACS 2.1.0) peak calling -================================================================== +MACS21: Model-based Analysis of ChIP-Seq (MACS 2.1) peak calling +================================================================ -Galaxy tool wrapper for the peak calling function of MACS 2.1.0. MACS has been +Galaxy tool wrapper for the peak calling function of MACS 2.1. MACS has been developed by Tao Lui https://github.com/taoliu/MACS/ @@ -15,7 +15,7 @@ ====================== Installation via the Galaxy Tool Shed will take of installing the tool wrapper and -the MACS 2.1.0 program. +the MACS 2.1 program. Manual Installation =================== @@ -31,7 +31,7 @@ <tool file="macs21/macs21_wrapper.xml" /> -You will also need to install MACS 2.1.0 and its dependencies: +You will also need to install MACS 2.1 and its dependencies: - https://pypi.python.org/pypi/MACS2 @@ -52,13 +52,14 @@ - http://toolshed.g2.bx.psu.edu/view/modencode-dcc/macs2 -This version has been substantially modified both to adapt it to MACS 2.1.0, and +This version has been substantially modified both to adapt it to MACS 2.1, and to re-implement the internal workings of the tool to conform with current practices in invoking commands from Galaxy, and to add new functionality. ========== ====================================================================== Version Changes ---------- ---------------------------------------------------------------------- +2.1.1.0 - Update to use MACS 2.1.1 and use conda to resolve dependencies 2.1.0-6 - Add bedSort step into bigWig file generation; terminate with error when MACS finishes with non-zero exit code. 2.1.0-5 - User must explicitly specify the format for the inputs (to allow