diff README.rst @ 3:4124781932db draft

Updated to MACS 2.1.1 and use conda for dependency resolution.
author pjbriggs
date Tue, 20 Mar 2018 11:25:04 -0400
parents 00d73c812399
children 11cf21ee4242
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--- a/README.rst	Wed Mar 22 11:36:07 2017 -0400
+++ b/README.rst	Tue Mar 20 11:25:04 2018 -0400
@@ -1,7 +1,7 @@
-MACS21: Model-based Analysis of ChIP-Seq (MACS 2.1.0) peak calling
-==================================================================
+MACS21: Model-based Analysis of ChIP-Seq (MACS 2.1) peak calling
+================================================================
 
-Galaxy tool wrapper for the peak calling function of MACS 2.1.0. MACS has been
+Galaxy tool wrapper for the peak calling function of MACS 2.1. MACS has been
 developed by Tao Lui
 https://github.com/taoliu/MACS/
 
@@ -15,7 +15,7 @@
 ======================
 
 Installation via the Galaxy Tool Shed will take of installing the tool wrapper and
-the MACS 2.1.0 program.
+the MACS 2.1 program.
 
 Manual Installation
 ===================
@@ -31,7 +31,7 @@
 
     <tool file="macs21/macs21_wrapper.xml" />
 
-You will also need to install MACS 2.1.0 and its dependencies:
+You will also need to install MACS 2.1 and its dependencies:
 
 - https://pypi.python.org/pypi/MACS2
 
@@ -52,13 +52,14 @@
 
 - http://toolshed.g2.bx.psu.edu/view/modencode-dcc/macs2 
 
-This version has been substantially modified both to adapt it to MACS 2.1.0, and
+This version has been substantially modified both to adapt it to MACS 2.1, and
 to re-implement the internal workings of the tool to conform with current
 practices in invoking commands from Galaxy, and to add new functionality.
 
 ========== ======================================================================
 Version    Changes
 ---------- ----------------------------------------------------------------------
+2.1.1.0    - Update to use MACS 2.1.1 and use conda to resolve dependencies
 2.1.0-6    - Add bedSort step into bigWig file generation; terminate with error
              when MACS finishes with non-zero exit code.
 2.1.0-5    - User must explicitly specify the format for the inputs (to allow