view test-data/test_MACS2.1.2_peaks.xls @ 5:3c435705aca5 draft default tip

New version 2.1.2-galaxy1 (updates UCSC dependencies)
author pjbriggs
date Tue, 27 Jun 2023 07:54:55 +0000
parents 11cf21ee4242
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#peaks file
# This file is generated by MACS version 2.1.2
# Command line: callpeak -t /tmp/tmpKNHGvp/files/000/dataset_2.dat -c /tmp/tmpKNHGvp/files/000/dataset_1.dat --format=BED --name=test_MACS2.1.2 --bw=300 --gsize=775000000.0 --nomodel --extsize=243 --qvalue=0.05 -B --SPMR --mfold 5 50 --keep-dup 1
# ARGUMENTS LIST:
# name = test_MACS2.1.2
# format = BED
# ChIP-seq file = ['/tmp/tmpKNHGvp/files/000/dataset_2.dat']
# control file = ['/tmp/tmpKNHGvp/files/000/dataset_1.dat']
# effective genome size = 7.75e+08
# band width = 300
# model fold = [5, 50]
# qvalue cutoff = 5.00e-02
# The maximum gap between significant sites is assigned as the read length/tag size.
# The minimum length of peaks is assigned as the predicted fragment length "d".
# Larger dataset will be scaled towards smaller dataset.
# Range for calculating regional lambda is: 1000 bps and 10000 bps
# Broad region calling is off
# Paired-End mode is off
# MACS will save fragment pileup signal per million reads

# tag size is determined as 50 bps
# total tags in treatment: 50
# tags after filtering in treatment: 50
# maximum duplicate tags at the same position in treatment = 1
# Redundant rate in treatment: 0.00
# total tags in control: 50
# tags after filtering in control: 50
# maximum duplicate tags at the same position in control = 1
# Redundant rate in control: 0.00
# d = 243
#chr	start	end	length	abs_summit	pileup	-log10(pvalue)	fold_enrichment	-log10(qvalue)	name
chr26	4118914	4119282	369	4119130	9.00	9.13132	6.31632	2.51561	test_MACS2.1.2_peak_1