Mercurial > repos > pjbriggs > macs21
view test-data/test_MACS2.1.2_peaks.xls @ 5:3c435705aca5 draft default tip
New version 2.1.2-galaxy1 (updates UCSC dependencies)
author | pjbriggs |
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date | Tue, 27 Jun 2023 07:54:55 +0000 |
parents | 11cf21ee4242 |
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#peaks file # This file is generated by MACS version 2.1.2 # Command line: callpeak -t /tmp/tmpKNHGvp/files/000/dataset_2.dat -c /tmp/tmpKNHGvp/files/000/dataset_1.dat --format=BED --name=test_MACS2.1.2 --bw=300 --gsize=775000000.0 --nomodel --extsize=243 --qvalue=0.05 -B --SPMR --mfold 5 50 --keep-dup 1 # ARGUMENTS LIST: # name = test_MACS2.1.2 # format = BED # ChIP-seq file = ['/tmp/tmpKNHGvp/files/000/dataset_2.dat'] # control file = ['/tmp/tmpKNHGvp/files/000/dataset_1.dat'] # effective genome size = 7.75e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 5.00e-02 # The maximum gap between significant sites is assigned as the read length/tag size. # The minimum length of peaks is assigned as the predicted fragment length "d". # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 1000 bps and 10000 bps # Broad region calling is off # Paired-End mode is off # MACS will save fragment pileup signal per million reads # tag size is determined as 50 bps # total tags in treatment: 50 # tags after filtering in treatment: 50 # maximum duplicate tags at the same position in treatment = 1 # Redundant rate in treatment: 0.00 # total tags in control: 50 # tags after filtering in control: 50 # maximum duplicate tags at the same position in control = 1 # Redundant rate in control: 0.00 # d = 243 #chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name chr26 4118914 4119282 369 4119130 9.00 9.13132 6.31632 2.51561 test_MACS2.1.2_peak_1