Mercurial > repos > pjbriggs > pal_finder

annotate test-data/illuminaPE_r2.fq @ 8:4e625d3672ba draft

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Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
author pjbriggs
date Wed, 16 May 2018 07:39:16 -0400
parents b6ccc7dd7b02
children
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b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
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1 @ILLUMINA-545855:49:FC61RLR:2:1:10979:1695 2:N:0:TCCTGA
0
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pjbriggs
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2 TACTGTTTAGAAAGCCTGTTCCAGAACTTGATCACTGTCACAGAAAATCTTTCTTACTATCCAGACTGAAGCTACCCTGGTGCAGCTTTGTGCTGTTACCTTGAGTCATGTCATCA
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3 +
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b6ccc7dd7b02 Version 0.02.04.3.
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4 IIIIIHIIIIIHIIIIHIHIIIIIIIHIIIHIIIHIHGIIIIIIHEHHHHHHHHIIHIIHFHHEHHIGHHGHGIHGHHFGAGIEHHGEGHBFIFDBHHHGDFHBDBHGGFGD8EB@
b6ccc7dd7b02 Version 0.02.04.3.
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5 @ILLUMINA-545855:49:FC61RLR:2:1:17449:1584 2:N:0:TCCTGA
0
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pjbriggs
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6 TCTGTGTGTGAGCACACACACACACACACACACACACACACACACACATGCAGGTACTTGCTCTGCCACCCCTGGCGGGCTGCGTGGTGTGCCTGACGACGTATTCTAATCCTACA
3f908e7fff4f Uploaded first version to toolshed.
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b6ccc7dd7b02 Version 0.02.04.3.
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8 GGGGG?CDCECEBEFEAGGBGEDGDGG>DGGDDDDBGGGGGGFEDBGB3@##################################################################
b6ccc7dd7b02 Version 0.02.04.3.
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9 @ILLUMINA-545855:49:FC61RLR:2:1:19063:1614 2:N:0:TCCTGA
0
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10 TATATATATATATAAACATATATATATATATTTTTTTCTCATTTCAGAACAAAAGTGAGATGAACTTTAATATGGTGGGGTGTATTTTGAGAGACTCTCTAGTTTGGGAGGAGTGA
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b6ccc7dd7b02 Version 0.02.04.3.
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12 DDDDDDDDDDDD:D@D+DDDDDDDDDDDD6DDDDD>A@:5>@##########################################################################
b6ccc7dd7b02 Version 0.02.04.3.
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13 @ILLUMINA-545855:49:FC61RLR:2:1:1978:1220 2:N:0:TCCTGA
0
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14 TCCTCTGACTAGGCAACAACAGCTTTTTTGCTCCTGGGCAGAGGTGTTCCGAGTGTATATTTTTTATAATTACGGCGCGCATTGGAAATTGATGTTATTTTATTTTGCGTGTGTGT
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b6ccc7dd7b02 Version 0.02.04.3.
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16 B?/?################################################################################################################
b6ccc7dd7b02 Version 0.02.04.3.
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17 @ILLUMINA-545855:49:FC61RLR:2:1:5626:1554 2:N:0:TCCTGA
0
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pjbriggs
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18 TCTAATATTATATATATCTGTGTGTGTATATATATATATACACACACACACACACATTGACATAAAAGCGAAATATAAACATTAGCAGCTGGGGCTAAAATAAAAGCAGGAAGGTT
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b6ccc7dd7b02 Version 0.02.04.3.
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20 IIIIIIIIIIIIIIIIIIIIIIHHHHIHIIHIIHIHIHIHIIIIIHIIGH2F8E2E=636:?BB<?==,A+-==<8AAE2A###################################
b6ccc7dd7b02 Version 0.02.04.3.
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21 @ILLUMINA-545855:49:FC61RLR:2:1:5879:1238 2:N:0:TCCTGA
0
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pjbriggs
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22 TCCCCACCCTGTCATGGTTCTATGTATATATATATAGCCATGTGTGTGGTACCAGGGATAGGTACCTGGGATTGGGGCAGTGACACTTTAGTGCCCCGTACACTACATGATGTTTT
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b6ccc7dd7b02 Version 0.02.04.3.
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24 HHHHHHHHHHHHHHHHHEHHGGGGFDHGHGHHHHHHFHHHHHGHEHEHEBEHEFB8EEEFEDAGEDBCEBBB@>BEC>@B@DCBBBECBB<AECBBBC>BA>B<;BA@A@######
b6ccc7dd7b02 Version 0.02.04.3.
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25 @ILLUMINA-545855:49:FC61RLR:2:1:6204:1090 2:N:0:TCCTGA
0
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pjbriggs
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26 TGCTTTGGTTCTAAGAGAAAAACAAGTGATGCACAAGCAATTCCTCGCCACCACCCAACTGATGCCCAGCCACCCCCCCAAGCAGTGAAAGAGAGAGAGAGATGAACCCCCTTCAA
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b6ccc7dd7b02 Version 0.02.04.3.
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28 HHHDBHHHEFGHHHHEHFHEHDDDDD@HHEHHEEHEFFEEEGDEGGGGEGEB>EBC>@@@@@@BB@FEBFBBB@A>AAA<;>A>;3>=??>>BB>?>@?1?>:9*@##########
b6ccc7dd7b02 Version 0.02.04.3.
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29 @ILLUMINA-545855:49:FC61RLR:2:1:8044:1926 2:N:0:TCCTGA
0
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pjbriggs
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30 TCAGGCAAGGTCACTGCCACCACTGGGGAGTGCCTGTTTCTGAAGGGCCCAGCCAACTCTGTCACAAGCTTTAACCATAATAAATCAGGAGGAGAGACAGGAGGATGCTGTGCTTT
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2
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
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32 IIIIIIIIIIHIIIIIIIIIIIIIIGIIIIFIIIIIGHHIIIIIGGEIHGHGHHHGGCHHCGGGGGGHGHGEGEGEGGGDGBECCBGGEDGB;8?BBBBDABC@:3==;=:<30:6
b6ccc7dd7b02 Version 0.02.04.3.
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33 @ILLUMINA-545855:49:FC61RLR:2:1:8157:1636 2:N:0:TCCTGA
0
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34 TAAACAACCAAATGAAACCATCTTTTCTACACAGCTCAAGTAGCCCTACATACAACACAAGCCACCTACAAATCAGGACTGATGGTAAGGCTGACAATCCAATCCACCACAACAAC
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b6ccc7dd7b02 Version 0.02.04.3.
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36 HFHHHHHHHHHHHHDHGHHDHHHHHHHHHHHHHHHHHHGGGHHGHHHHHHHHHHHGHHHHH@HHHFHGHFHHEHHHHHHDHBFEBBHFFDHE>EFHBEFD################
b6ccc7dd7b02 Version 0.02.04.3.
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37 @ILLUMINA-545855:49:FC61RLR:2:1:8899:1514 2:N:0:TCCTGA
0
3f908e7fff4f Uploaded first version to toolshed.
pjbriggs
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38 TATCATTGAAATTTTTATAAAAACTGTGAAGAGAAAAATGTAACACTTCAGAAACGCAATTATTTTGAGATGTCCAGATTTTTTTTTATACTTCCACTGCTGTGTGTGTGTGTAAC
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pjbriggs
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39 +
2
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
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diff changeset
40 IG+GGGIIIIIIIIIIDIIIIIIGHHIIHIIIIIEGHIHIHIIHIIIIIIIIIIIIIIHIIDIIIIIEDIIIDIHGHFIIIIIIIIIHIFFBHGIGBGGHBDBFEGEGCGEIEDEB