Mercurial > repos > pjbriggs > pal_finder

annotate test-data/illuminaPE_microsats.out.re_match @ 9:52dbe2089d14 draft default tip

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Version 0.02.04.8 (update fastq subsetting).
author pjbriggs
date Wed, 04 Jul 2018 06:05:52 -0400
parents 5e133b7b79a6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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7
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
1 readPairID\ Motifs\(bases\)\ Bases\ in\ all\ Motifs\ Possible\ Extended\ Possible\ Spanning\ Primers\ found\ \(1\=y\,0\=n\)\ F\ Primer\ Name\ Forward\ Primer\ R\ Primer\ Name\ Reverse\ Primer\ Amplicon\ Motifs\ Number\ motif\ bases\ in\ amplicon\ Primers\ on\ sep\ reads\ Extend\ with\ primers\ Spand\ with\ primers\ Occurances\ of\ Forward\ Primer\ in\ Reads\ Occurances\ of\ Reverse\ Primer\ in\ Reads\ Occurances\ of\ Amplifiable\ Primer\ Pair\ in\ Reads\ Occurances\ of\ Amplifiable\ Primer\ Pair\ in\ PALs
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
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2 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:10979\:1695\ (AG|TC)\(14\)\ \ 14\ \ \ 1\ test\_.*\ TTCTCCCACTATATTTTGCATTGG\ test\_.*\ TCCAGACTGAAGCTACCCTGG\ (AG|TC)\(14\)\ \ 14\ 1\ \ \ 1\ 1\ 1\ 1
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
3 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:17449\:1584\ (AC|TG)\(36\)\ \ 36\ \ \ 0\ \ \ \ \ \ \ \ \ \ \ \ \
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
4 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:19063\:1614\ AT\(14\)\ AT\(14\)\ AT\(14\)\ AT\(14\)\ \ 56\ \ \ 0\ \ \ \ \ \ \ \ \ \ \ \ \
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
5 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:1978\:1220\ (AC|TG)\(12\)\ \ 12\ \ \ 1\ test\_.*\ GCAGTAAACAAAGGCAAAGGG\ test\_.*\ CCTGGGCAGAGGTGTTCC\ (AC|TG)\(12\)\ \ 12\ 1\ \ \ 1\ 1\ 1\ 1
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
6 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:5626\:1554\ AT\(14\)\ (AC|TG)\(16\)\ (AC|TG)\(16\)\ AT\(12\)\ \ 58\ \ \ 0\ \ \ \ \ \ \ \ \ \ \ \ \
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
7 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:5879\:1238\ AT\(12\)\ \ 12\ \ \ 0\ \ \ \ \ \ \ \ \ \ \ \ \
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
8 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:6204\:1090\ (AG|TC)\(12\)\ \ 12\ \ \ 0\ \ \ \ \ \ \ \ \ \ \ \ \
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
9 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:8044\:1926\ AT\(12\)\ \ 12\ \ \ 0\ \ \ \ \ \ \ \ \ \ \ \ \
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
10 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:8157\:1636\ (AC|TG)\(12\)\ \ 12\ \ \ 1\ test\_.*\ AAGTACAGTGGGGAGGCTGG\ test\_.*\ TTTTCTACACAGCTCAAGTAGCCC\ (AC|TG)\(12\)\ \ 12\ 1\ \ \ 1\ 1\ 1\ 1
5e133b7b79a6 Uploaded version 0.02.04.6 (uses conda dependency resolution).
pjbriggs
parents:
diff changeset
11 ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:8899\:1514\ (AC|TG)\(12\)\ (AC|TG)\(12\)\ \ 24\ \ \ 1\ test\_.*\ TCTTTATCTAAACACATCCTGAAATACC\ test\_.*\ AAACGCAATTATTTTGAGATGTCC\ (AC|TG)\(12\)\ (AC|TG)\(12\)\ \ 24\ 1\ \ \ 1\ 2\ 1\ 1