Mercurial > repos > pjbriggs > pal_finder

annotate test-data/illuminaPE_filtered_microsats_assembly.out @ 3:e1a14ed7a9d6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated to version 0.02.04.4 (new pal_filter script)
author pjbriggs
date Wed, 24 Feb 2016 08:25:17 -0500
parents b6ccc7dd7b02
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
1 readPairID Motifs(bases) Bases in all Motifs Possible Extended Possible Spanning Primers found (1=y,0=n) F Primer Name Forward Primer R Primer Name Reverse Primer Amplicon Motifs Number motif bases in amplicon Primers on sep reads Extend with primers Spand with primers Occurances of Forward Primer in Reads Occurances of Reverse Primer in Reads Occurances of Amplifiable Primer Pair in Reads Occurances of Amplifiable Primer Pair in PALs
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
2 ILLUMINA-545855:0049:FC61RLR:2:1:1978:1220 AC(12) 12 1 test_3 GCAGTAAACAAAGGCAAAGGG test_4 CCTGGGCAGAGGTGTTCC AC(12) 12 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
3 ILLUMINA-545855:0049:FC61RLR:2:1:5879:1238 AT(12) 12 0
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
4 ILLUMINA-545855:0049:FC61RLR:2:1:17449:1584 AC(36) 36 0
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
5 ILLUMINA-545855:0049:FC61RLR:2:1:8157:1636 AC(12) 12 1 test_5 AAGTACAGTGGGGAGGCTGG test_6 TTTTCTACACAGCTCAAGTAGCCC AC(12) 12 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
6 ILLUMINA-545855:0049:FC61RLR:2:1:8044:1926 AT(12) 12 0
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
7 ILLUMINA-545855:0049:FC61RLR:2:1:5626:1554 AT(14) AC(16) AC(16) AT(12) 58 0
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
8 ILLUMINA-545855:0049:FC61RLR:2:1:10979:1695 TC(14) 14 1 test_7 TTCTCCCACTATATTTTGCATTGG test_8 TCCAGACTGAAGCTACCCTGG TC(14) 14 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
9 ILLUMINA-545855:0049:FC61RLR:2:1:19063:1614 AT(14) AT(14) AT(14) AT(14) 56 0
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
10 ILLUMINA-545855:0049:FC61RLR:2:1:6204:1090 TC(12) 12 0
b6ccc7dd7b02 Version 0.02.04.3.
pjbriggs
parents:
diff changeset
11 ILLUMINA-545855:0049:FC61RLR:2:1:8899:1514 AC(12) AC(12) 24 1 test_2 TCTTTATCTAAACACATCCTGAAATACC test_1 AAACGCAATTATTTTGAGATGTCC AC(12) AC(12) 24 1 1 2 1 1