Mercurial > repos > pjbriggs > pal_finder

annotate test-data/illuminaPE_r1_bad_ranges.fq @ 9:52dbe2089d14 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Version 0.02.04.8 (update fastq subsetting).
author pjbriggs
date Wed, 04 Jul 2018 06:05:52 -0400
parents 4e625d3672ba
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
1 @M00879:99:000000000-AH9KG:1:2107:10006:2535 1:N:0:TAAGGCGA+TAGATCGC
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
2 ATATATATATATATATGTAGTATAATCTCACTGGAAAGGAGACGAAAACGAGCAGCTCCGAGCTTTCGACTTTATTTCAAGTCATCTTCAGGGCAACTGACAAATTTTTGTGTAGCAATAGTATATAGACACCAGACGAGATTCCTGACCTCACATCTGGGAGG
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
3 +
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
4 CCCCCFGGGGGGGGGGGGGGGFCGGGGGGFGCG@FFGCDGGGGGGGGEGGGDGGFDCFGGGCDGGGGGGGGGGGGGGGGDGFGFGFGFFGGG@FEGGDEFGGGGGEFGGGGGGGFGFGGGGGGAFE?9FGGGGGGGG@F7F7AFDGGFFGFFGGG9EE9D8?>8
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
5 @M00879:99:000000000-AH9KG:1:2107:10032:7900 1:N:0:TAAGGCGA+TAGATCGC
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
6 ATCTATGTATTTATCTATCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAATCCGCTCCCCTTTCTATCTCGATGTCCAATCATTATACACACACCTACACGAAAGATGCTATAGAAGCGATGGGGGACTATAGGTGTATAGCAACTCTATACATCAACCAGTCTCTGCGCTCGTCCCCCTGTCG
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
7 +
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
8 CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGEGGGGGGGGGGGGGGGFGGGCFGG@FGGEFGGDGGGGGGGGGGGGGGA9EFFC,@@F@FG8FGG9?EGG,,4:?@FFAGG@EFF<B,CFBEGGD:EFGD7F+>+,4,@,9E9,@ECEEEFC+8+4>B88;=E3,,2,@A68,7=@DDGED=A8=A8FGE+@DDD,++0@+=0+<3<>095?**
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
9 @M00879:99:000000000-AH9KG:1:2107:10061:6317 1:N:0:TAAGGCGA+TAGATCGC
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
10 TATATATATATATGAGAAAACTGGTGTCGGTGAGGACTCATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACATAGATATCTCACGGGGCGAGCTGCCGCTGCTGCTGCTGCCGCGGAGGGTGCAGAATAAGACGAGGAGGTGGAGAGAGGTGTGGAAAAAGTGCCGTAGAAGAGATCTGTGCCGTCGCACAGCTCTCGTGGTGCACCTATGGGAGAGGCGG
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
11 +
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
12 CCCC@FFFFFGGFGGGGGGGG8EFG?FFGGEGGGFGGGGGGGGGGGGGGDFGGGGGGGGGGGGGGGGGGGGFG@CFFGGGGGGGGECGGGGGGGF,9,,C,E,?,,9,5<,,:=+78B+++@,,,+++6+,8,,A55A,,+++@+87:*3*@3D79;,,,451***>B4<**6,=***4=;8*+++*/*21+0**3//CEG86+A9:1<++2**)*)2)**+629*9*715:***00*:*755*0*.00
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
13 @M00879:99:000000000-AH9KG:1:2107:10072:8112 1:N:0:TAAGGCGA+TAGATCGC
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
14 GTGTGTGTGTGTGTGTGTGTGTTGGTTGTGAAAGTTATCTCAGCTTGTTATATGGAATGACGACTGTCAAGCTTACCAGTTTCTTACATGGGATGACAAAGGCTAGGCTTACCAACTTGTTACATGTAATGACATCGGTAAAGCTTATCAGTTTGTTACAGGGCATGACAACGGTCAAGCTTACCAGCATGATACATGTAGTGACGAAGGCCAAGCCACAAGAAGATAACAGGCAC
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
15 +
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
16 CCCCCFGGGGFFFGGFFGFGGGGGGGGGGDFGGGCGFGGGG,FFGGFFFCDCDEFFCFGGFGCEGDCG<DGGFA@FCFCFDGFGCEFFGG,CEECFGFGFG,BAFFGGGGGGGAFEC,EFDGGGFGGGGGFGFGGGGEEFGBAFDFCGCAFGGGGEEFFGCFG+9EFGGGD88BECEGGG?EGGGG8,@EF,,@DDFA@3@:DA9CEEDE6AFGGF7D+5CEF591C:>7>CD*;F
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
17 @M00879:99:000000000-AH9KG:1:2107:14372:5471 1:N:0:TAAGGCGA+TAGATCGC
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
18 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
19 +
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
20 CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
21 @M00879:99:000000000-AH9KG:1:2107:10084:6474 1:N:0:TAAGGCGA+TAGATCGC
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
22 CAATTACCTAAGTATCTGAATAGTCATTTCCCTATTAGGGGTGATCATAGTCGAACGGTAGCACTCCCGCTGGTCACGCTCTGGACCAGAGTTCAAATCTTGGCTGGTCGAGGTTTACGTGTTTTATATCTATCTATCTATCTATCTATCTATCTATCTATATATATATATATATACATATATAT
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
23 +
4e625d3672ba Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
pjbriggs
parents:
diff changeset
24 CCCCCGGGGGGGFGGGGGGGGGGFGGGGGGGGGCFGGGGGGFGGGGGGGGGGGGGGG@FGGGGGFGGGGGGDGGGGGGGGGGGGGGGGGGFECCEEEFGGGGGGGG>FGG>C+BE,BF:FGFFGGGGGGGGGGGGGGGGGFGGGGGGGFGGGGFDEEGGGGFGGGCFGGGGGGGGFDFDCFCD;E