Mercurial > repos > pjbriggs > pal_finder

comparison test-data/454_in.fa @ 0:3f908e7fff4f draft

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Uploaded first version to toolshed.
author pjbriggs
date Thu, 11 Dec 2014 09:23:24 -0500
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-1:000000000000 0:3f908e7fff4f
1 >FW1N29Q04EHWSH rank=0000058 x=1727.0 y=431.5 length=236
2 AATAGTATAATGCACAGCAGGCAGTTAACATGCATGTGAATTGTAACACATCTGTTATAC
3 ATTACTATTAAACTTTCTGACAGTTTCTCTTTAGGTGCTTGCCCTGCCAGGCTCCGTTGT
4 GTAGGGTTAAAGAACAGTCGTTTACCACCTCGCAACCTGGTAAGGATCCATAATATTCCC
5 GTAATGTGGTATCAGACAGTTTGCATTGGTGCTTAGTACCTTTTAAATTTAAATTT
6 >FW1N29Q04ECSPS rank=0000063 x=1668.0 y=3534.0 length=259
7 TTTATGAATTTATCTATGTAACATTTGGCTTGGATGCTTCCTTAATTTAGCAAAGTGTCA
8 TTGGCGCACTCCATCTCTTCCAACTAGTTTAATATTTTTATCATTTGACATCTGTTCAGT
9 TAGGAGCAGGTCAGTTCTAAGCAACTAAGCATATGTTGACAAACTTAGCAGAAATGTTTG
10 AGGCTTAGTCATTACTTACACAAGAGAGAGCAACAACTTACATTGATGAAATTGATCTTT
11 GCTTATTTTAACCAGTTAT
12 >FW1N29Q04ECFP3 rank=0000073 x=1664.5 y=3081.0 length=55
13 TTTGGCCCTGTATACCAATATATTGCGCTTTGATGATGCCTCCTCCCCACCCTTT
14 >FW1N29Q04EIN9F rank=0000081 x=1735.0 y=3265.0 length=51
15 ATATGAGTATATAGGCCAAGGGTGGGAGGAGGCATCATCAAGACACCATAT
16 >FW1N29Q04EE3VT rank=0000085 x=1695.5 y=727.0 length=223
17 GTTGCCTCATATTCTCTACGAGACATTAGTGTGGTGGTAATAGGATGCAGAATAACACTT
18 ATAATTCATAATTGTAATTCTTGAGTTAGAAGTGAGTTAGATAGAAAGACTCATAGTAAT
19 TAGGGATCTCACATGAGAAGGACACTTAGCAAAGGTAACAGATAGGACAGATGGCGGAGA
20 ATGCTCCAAATGACTCTGGTAAAATGACTAACAGTCAAGATAG
21 >FW1N29Q04ECD63 rank=0000097 x=1664.0 y=1101.0 length=199
22 TTCATGTCCTTCTCTATCACTCAGCCCTCCACTGTTCTCTCCCTCTCCGACCTTTCACCT
23 TGGCTTCTCTACTTTGTCAAATCACCAGGAGAGATTACCTGAAAGACAAACAGGAAGGAT
24 TTCTCAACTATTCAAAGCAATAGAAGTGGATTCTTAGTTGCAAACCACAGCATGTTCCTG
25 TTGACCCAGATCCTGTTTC
26 >FW1N29Q04EIIT4 rank=0000106 x=1734.5 y=330.0 length=354
27 TCTCAAGTCAAGCTGTCAATTTGCCATCTCAGCCAACTCCATCAGCTTCACCATCCATTC
28 TTCCACTATAGGTAATGTCTTATCTTTCCACCTCTGTGCATATAAAGCCTTGCTGCTGTT
29 ATATATAAACAAAGTTCCATAGGTTTTCCAACTGTTTATTCATCAACCGAAAGGAAGTCT
30 CTGGTTTTGATTTAATATTAAATCTTGAAAATCTTCTGTATACAGATATGTATCTTGTTC
31 CAGATTATTTTTGTCTTTTATAAGTCCACCAGAGATGTAGAGCAGCCTCCTCCAGCCAGC
32 TACTGGTTGGCTATGTTATGTGGATACAAGGGCTGGATCTAAAAGTCNGCATCT
33 >FW1N29Q04EW9OS rank=0000113 x=1902.0 y=186.5 length=85
34 GGTTAGTATTGAGACACGCTGTTGGCTTGGCCAGTGCTCCGTGCTAGTAATTAATAAGAA
35 TGCTTACATAGGTCATCCTGTTGAA
36 >FW1N29Q04ED6UB rank=0000114 x=1684.5 y=2961.0 length=344
37 TTGACATACACCTTAGGCCCTTCATTCATAATTAACGCTACATTTCACTTCCCTGCATAT
38 ATTTATCAATTCTACAAGATTAGATCATCTTCCTATTAGACCCTTCTCTTTCTTCTTCCT
39 TTCACAAACAATAAGAGATCTACAACATGTGTATCTTGTTTAACAGATAACCAATCTGTA
40 ATGATGAAACATTAAGCCTCTGCGCATAATAACTTATCTTTCCCATAGCTGCAAACAATA
41 ACGTAGATTAAAAGCCACATTTTGCTTTCATTAAAAGTACTTCTCAACTTTCATTGTCAG
42 GCAAACGTAAATGTATCTTTATTGTGGCTTCATTATGCTTTGTG
43 >FW1N29Q04EJ8OD rank=0000117 x=1753.0 y=2651.0 length=157
44 CATCCATGTTGCTAGTTGAGAGAACTTAATCATACTAATAAATTCATGTGTATTTGTATA
45 TGAGTTTCAAATCCATTAGATTACTTTCCATTACATCATGGAGGTGGGAAATCTGTGGCC
46 CTGCAAATTCTGCAGAATTACACCGGCCCACCCACTC
47 >FW1N29Q04EBJG5 rank=0000123 x=1654.0 y=2247.0 length=322
48 TGGCAATGGCAAGTTACTTTCATTTCAGAGCAAGATAAAGTGGCTGCTGCAATTATTACC
49 AAAGCTTCATAAATTACTATGCAACCTTTCAACTTCTCTAGAACTCTTCAACAAGTGAAG
50 AGGTAAGAGAAAGAAGCAGCTTATATCCATGCCATGTTATTTACAGTTAGCATGGTTTAT
51 TCTTCTAAATAGTACAGTATTTATGCTAATTTAGCATCAGTGCTACATCACTGTGTTTCT
52 CAACATTGTCCTCTTTGACAGCCAAATCATTTGCTTCCAGCTTGACTATGGCACATCTCA
53 AATCACAAAGCTTTCAAACTGC
54 >FW1N29Q04EKD0V rank=0000126 x=1755.0 y=1389.0 length=299
55 TGGCTCAGATCACCGCAGATGGAGACTGCAGCCATGAATTAAGACTCTTGCTCCTTGGAG
56 GAAGCTATGGCAACCTAGATAGCATATTAAGACAGAGATGTCACCTTGCCGACAAGATCC
57 GCATAGTCAAGCTATGGTTTCCTAGTAGTAATGTATGGCTGTGAGAGCTGGACCATAAGA
58 AGGCTGAGCGCCGAGATTGATGCCTTTGAACTGTGGTGCTGGAGAGACTCTTAAGAGTCC
59 CTGGACTGCTAGGAGATCAAACCAGTCAATCTTAAGGATCAACCCTGATTGCTCATTGG
60 >FW1N29Q04EKXU7 rank=0000132 x=1761.5 y=2529.0 length=150
61 TTACAACACCACTGGCAGAGGAATGGATCTAGGCAAATATGACATTGTGAGTAAGGCTCT
62 CAGGAGACTCTCTCCTCTTTATTCATGTTTGTCCTTTGTTTGTCTTGCAAAGCCGACCAG
63 CAAAAATAGTACCATCTAAAGCAAAGAAAT
64 >FW1N29Q04EOC22 rank=0000134 x=1800.0 y=2476.5 length=236
65 TTAATATTACCTAGAATAAATGATTTCATCCTTTTTATTATTTCTATATATGAAGTGGAC
66 TTTATTTTATTGGTTGGTTAATCTTCAGAGAAGAAATAGGAGACAGGATTTTTAAAATTA
67 GTAACTATTTCCATGAACCAAGGAATCTACTAAATGTTATGGAGGAAACATGGCCATCAT
68 TGATCTGCAGGTCCTCAGAATCATGTAGTAAATTTATGCAATATCATTAACTTGGC
69 >FW1N29Q04EF0UZ rank=0000135 x=1705.0 y=2505.0 length=273
70 TTCTATATCGCTTAACGAGGAGTCAAGCTAACTTGGAGGAGATTTATCTTTATGAGGGTA
71 GATGATGCCATTTATGAGGAAATGCAAGATCTTGTTGCAAGGAGCCAGTGTTGGTGATGA
72 TTCAACTCTTCCTCCTCCACAATCTTCTGAAATGACCTCCCTTCACCCTAGTTTGACCAC
73 TCTTCCTCCTAAACCAGCCTTCAAGCGGAAAGTCATTCTTGTTGAGGCAAAAAGGTTCTG
74 GGGGCATTTGAAGGGCGCAGGAGTGGGAGCAAA
75 >FW1N29Q04EH316 rank=0000142 x=1729.5 y=1660.0 length=60
76 TTTGGCCCTGTATACCAATATATTGCGCTTTGATGATGCTCTCCCACCCTTTGGCCCTGT
77
78 >FW1N29Q04EJHIK rank=0000147 x=1745.0 y=218.0 length=370
79 TTTAAATTATTTGTATAATGATGGGAATATCAATTTCCTAGATTTGGTCTTCCATGAAAT
80 CAGTATTTCCATGTCAACACCACCCAAAGAAATGAAATAAGTTGTGCAAGTGAGGTAGTC
81 TATGTAGAAATATAGAGGGTGACCTTGACAGAGAGAGGGAAGATCTGTTACCAAGGCAAC
82 AAACAGATAAACATGGCTTAAAACCCATACAAAGAGAGTGTTTTACAAACAGGCATCCCC
83 TAAGAAGATAAAAAGCACATTCAGACTTGCAAGATTTTGCAAAATATAGCCCATTCTAAA
84 TAGTTAGGCCTATGTGGCATCTGTTCCTTGGTCCAGGGCTACCCTTGTAGGGCTGACAAT
85 CAGTCTTTCT
86 >FW1N29Q04D6RZR rank=0000148 x=1600.5 y=1189.0 length=344
87 TGACTGATTACTATATTAACTATAATGTGGTTGGTTGGTTCAGTATGGGAATTCAGATTC
88 AATCAAACACCACACTTCCTGTGTTAGCATTATGTTTGACCCACCGTGTTTAAACAACTA
89 CATTATGGATTAACCATGACTTTCAAAGTTCCAGGCACCTTTCTAATCTGGAACTACTGA
90 ACCTGGAGCTTCTGCAAATAATTAATGCCTGTCAACTGACTTACACTTATTCCCTTCTGT
91 AACATTGCTGCATCTGGCAACAACGTGAGAATGTACAGCAGCCATGAAGGTCTTCTGTGT
92 TTCATCTGACAGAAGAATTTAGCTGGAGTTCAAGTACAATTAAA
93 >FW1N29Q04EFU7E rank=0000151 x=1703.5 y=3368.0 length=65
94 ATGATGCTGTCATCTAGGTGTTGTGGTTGGATGTCATGGTTGATGACAGTTGCATGTTAC
95 GTACC
96 >FW1N29Q04D78RB rank=0000158 x=1616.5 y=4037.0 length=274
97 TTAACCTGGTGATACAAATACCTGGATTTGCTGCTGGACAGCTGGAAAGAACTGCAACTG
98 TTCACTGGCCTATGAAAGGAGTTATTCAGATGCAATATATTTAACAAGGTGCTGATAAAC
99 TCAAACCTCACGCAAGAAGGAACTGATATGGCCATTGAGCAGCAGAAAAGTGGGCTGGGG
100 GATACATAAAATCTAAGTAGAAACTATGTTTGCCGCCTACCCAATCCGCTTTGTTCTAAA
101 ATGGGAAGCCTCAGAATTCACCGCTGTTCTAATT
102 >FW1N29Q04EUK6W rank=0000162 x=1871.5 y=2102.0 length=378
103 TTTGGTCTGGTAGTGTCTGGTTCACATCCTTGTCTTAACAATGACCTAGCAAGGGAAGAG
104 GAGGACTAGATCCATCATGAGAAGTGTCTGGATTCTCATAGAGGTGCCTTTAGTTAATTA
105 GGTGCCATAGAGTCATGTTTGATTTCTGCTGACTGAATGAACAATACCTGCCATCCTGAC
106 CTGATTCCAGTAATAATCTCTGCATTTCCCAAGCACATTCCAGTTAATTTATTTGATCCC
107 ATTCATCTGTGATCTAAGGGTTGACCAAGGCATTAGTCACCACTAGAAATGAGAGGGTGA
108 CAGTGACCTTGGATTGGATCATGTCTATGTGGACTCCATGCATGTGGATCCTGGTGGCCC
109 CTGATTCTGAGAAGCTCT
110 >FW1N29Q04EOQ8A rank=0000163 x=1805.5 y=328.0 length=252
111 GAATCTCAGGTATTAAGGAAATCATTGCAAAGTGATCAGGAGCTTCAAGGGCATTTAAGT
112 TATGGAATCATACACCATAAGGAGTAGATGATCTCTGGTTACCATAGGGACCTAATGGCT
113 AATACAGCAGCTCATCATCCCTACAGCACCTTTGACAGAGTCTTCCAGCAGGGACTACAA
114 AGAAGTGTGTTTCTTTGCACTGAAGAGTGATTTTCACCAGAAGGAACACCTGACAGAGAT
115 GCAGAGCTAAAT
116 >FW1N29Q04EOZ5Y rank=0000173 x=1807.0 y=3716.0 length=55
117 GGTTGAGAGAGTACATGAATGTTCAGTACAAGGCCAGTTTCTTGGGTTTAATCCC
118 >FW1N29Q04EGGLO rank=0000175 x=1710.0 y=2426.0 length=208
119 GCAATTAAGGCCTTGGCTACTGAGCTTCAGATGAAGTCAATTGAGAGGAGAAGAACAGCA
120 CAGGGAATGAATCAGTAGACATAGAATAGATCGATCTAGCTAGGACTTTTGTTGAGTTGG
121 AACAGGAGGGATATTGGAAGACAGATTTATAATAATTTAATAATGCTCAGAATCTGCTGC
122 TGTGTCTGGGTGGCCATGGTACAGATAT
123 >FW1N29Q04EKZW7 rank=0000178 x=1762.0 y=1097.0 length=403
124 GTTTAGTTGATTTGAACTGTGAGAATAATTTAATTCGACCAGAGTATAGAAACATAATTA
125 AACAACATTCCATTCATTCAATTTAATTTCATGGGAAAGAAGAGAGAGTGAGGCCACACT
126 CCCAATTACTTGTGGTCAGCAATCACTTTCTTTATTAGCATCAGTCACTTATTGGTTTCT
127 GACTGTTGAGGGCAGCAGGCGACTTTGCATCACTTCAGAATCCTCTGAGCCTCTTTCTTC
128 TCATGCTAACATCTTCTGGGTTTGCCAACTAATCTAATGTTCTGGCTCAATTGTGGTACA
129 TCCAAAATCACAAATAGACACATACGCGCACATACATACACAAAATATATTTATGTTTTC
130 AGAACAGAAGTGAAGCTTTGCAAAGCTGTGGATAGTCTGCTGT
131 >FW1N29Q04EP35X rank=0000180 x=1820.5 y=2307.0 length=298
132 TTTATTTACCCATCTTATTTGTGCAGCTGTAAGAGATTGATAAGGGGAAAAAGCAAAAGT
133 ATATGAATTTGTATTTGTATTTGTAATCAGAGGGATGTGTGTTTGTGTGTGTGTGTATAA
134 GGATCCATCCCTGGATTATGGGTTCCACTTCACTGGACATGTTTACCAGAAGTGAATATA
135 GCTATTCTAGAGGGACATTTCTGGAACACAAAAAGTAAATTAGATGAATCACATTGCATG
136 TATATTTAAGCAATTTAAATGACACACACACACACACACACACACACACACACACACA
137 >FW1N29Q04EQDJ2 rank=0000185 x=1823.0 y=2192.0 length=65
138 TTCCTGATAGGCCAGGATTCTGATTAACCTCTGCCCACTACAGGATGCTTACATGAGCTC
139 CTGGT
140 >FW1N29Q04EK7RS rank=0000186 x=1764.5 y=3078.5 length=112
141 AATGATTACGAGATCATCTCACCAACACCTTCTCTGACTCATGGCTAAGATCAGCTGGAA
142 GGCCTTGCTTGTGACCCATTGGGAGGACTCATCTTAATCTGGGTTGAGAGCA
143 >FW1N29Q04EO2M2 rank=0000190 x=1808.0 y=2828.5 length=262
144 TGGTCCTTCAGGTCTTCCAACAGTGCACCCATTGCCTCCGTAACTGAGTCCATCCACTTT
145 GCTGCTGGTCATCCTCTTCTCTTCCTTCCATATTTCCCAGCAATAGAGCCTTCTTCAGGC
146 AGTGAGGTCTTCACATAATGTGTCCAAAGTAGGATAATTTGAGCCTGGTCATTTATGCCT
147 CAAATTCTTTACAGGTTAGATATCACAGCAATGACTAGGTTCTTGGACAGTAGTTAACAG
148 TTAAGATGTTAATGTTTATTAA
149 >FW1N29Q04EXPGO rank=0000196 x=1907.0 y=150.0 length=120
150 GACAGAACACACTTACAACTAGCCATATATAAGCAATGATCAGGCACCTGCCAATGTCTG
151 AACTAAGGTAAGGGCTACTCATCAGTCACCTTCCAGACACAGATCAAGAAATCCAGAAAG
152
153 >FW1N29Q04EBESH rank=0000203 x=1653.5 y=271.0 length=142
154 AGTCATGCAAGCCTAATCATGTAACAACATTTAAATTAAGCAAATACACTGATACCTTAT
155 AGTTTGACTAAAGACTTTGGCTTTCCATAAACAACTCCAGTAAACTGATTTTGCTTGCTG
156 TAGTATTCCTAGCTTAACTATT
157 >FW1N29Q04D8NWF rank=0000214 x=1621.0 y=3181.0 length=365
158 TTAGGCTTAGTACATTGTATGAACTCAGATATTGTGATATATAAACCAGGGCTGGTGGCT
159 CAACATGCTGGGTAAATCCAGCCAATTATGATAACTAGAATAGTATAGCAGTTAGTGTTA
160 AACTTGTATAAGGGAACTCAAGTCCAAGTCCTCACTCATTCATGGAACGCCTTGTGTGAT
161 TTTGGGCTAGTCACTCTTCTCAGCCCAACCTATCTCACAATCATGATTTAGAAATAATGG
162 CTTAGCATGACAAATGGATCCAATCATATTCAGTATTTATTTGTTTGGGGGATGTGATGT
163 AGAAGCATGGCTCAGTGATGCTTCTACCAAATGATACTCTCTCAAGTGTCAAACCTTCAG
164 TACAG
165 >FW1N29Q04ETFO7 rank=0000224 x=1858.0 y=1577.0 length=148
166 TTGGCCTTTCTTGATAGATAATTTCTAGTAATTTCACACATACCCGTGCTGGACCATCTC
167 CAACACCATCTGTCCTGGGCTGACATAATTTCATCAGTTGCCCATAAACATGGAGAGTAA
168 TGGGTTTCAGGCTGTGGGGTAGGGAGGC
169 >FW1N29Q04ECPCP rank=0000226 x=1667.5 y=3271.0 length=376
170 TTAGTGATGACATCACAACTGGTTGGTGGTGCTAACAACTGCTATTGAATGTGTCTTCTC
171 GATATATCACAGAGCCTAGCTTGTAATGCAATAACAACTAGCTGAATACATGATTTAATT
172 GTTTGTTGCCCAGCTGTACTAATAAGCAAGCTTGATGTTAGGGATCACCCAAGGTCATTT
173 CCTTAATGCTGCTAACCTGCTGGAGCTGTCATTTATTACTAGATTTGTTGAATTATGACC
174 AGTGTGTTCTAAAGAGCCAGATGTTTAGTCTAAAGAATAACACATGATCTAGTAGGGATT
175 ACAAGAGCTCCAGTTTCCCTCTGGAATTTGTTGGTCATGGCTTGTGATGATCAAAGTTGA
176 ATATGCCTGAAATAAT
177 >FW1N29Q04ECVNR rank=0000229 x=1669.5 y=3253.0 length=386
178 TTCTCTGCAAGTTGGTGGCACACATGCAGGATGGCTAAGATTATCATCTGAAATGAAAGC
179 CACAAGGTGAACTTCCAACAAATACCATGAAAAATGACTGACCTGCAAAAGGTAGAGGTA
180 ATAAGAACTCTGGGAAAGTTGAGCAAGTACTTAAAGAATCAGTGTTAAAATGTCATGCCA
181 CTGATGTGTGTTAATTTCATATGGTAATTTATATGTATGGATGAGATAATTCTTGCACTG
182 TAAATAGAATAAGGGAGAATAGAGAAAACTGCAGCCAGGTGAGTAATATTTCTTTTAGCC
183 TGTGCAGGTGTTATTTGTTGAAAAGGTGTTGTTCTACTGTCAGGCTCAGTCCAAGAACAG
184 TTCATCCAAATTCATTTCATTTATTG
185 >FW1N29Q04EFJFR rank=0000232 x=1700.0 y=405.5 length=379
186 TGGCAATGGCAAGTTACTTCATTTCAGAGCAAGATAAAGTGGCTGCTGCAATTATTACCA
187 AAGCTTCATAAATTACTATGCAACCTTTCAACTTCTCTAGAACTCTTCAACAAGTGAAGA
188 GGTAAGAGAAAGAAGCAGCTTATATCCATGCCATGTTATTTACAGTTAGCATGGTTTATT
189 CTTCTAAATAGTACAGTATTTATGCTAATTTAGCATCAGTGCTACATCACTGTGTTTCTC
190 AACATTGTCCTCTTTTGACAGCCAAATCATTTGCTTCCAGCTTGACTATGGCACATCTCA
191 AATCACAAAGCTTTCAAACTGCAATTTGCACACTGGAGCTTGGAGGCAAACTTATTTTGT
192 TCACGGAAACTCTCACTCC
193 >FW1N29Q04EGERL rank=0000233 x=1710.5 y=47.0 length=274
194 TTGAATCTGATCAGGAAGGTTCAACTGGTACAGAATGTAGAAGCCAGGTTACTGAGTGAG
195 TCACCCAGTCACGTTCATGTTACTTCTTCATTGAAGCAACTGCATTGGATGTCAATTACC
196 AAGCCAGGTTCAGAGTTTGGTTAGGATATATAAAGCCTTAAACATCTGGAAACCAGGATG
197 CCCATCAAATTGCCTTTCTGTTATCAACCTGATTACTCACTGAGATCATCAAGTGAGGTG
198 CTGCAATGTGTAATGAATGCTGGTGGTTGCTTGT
199 >FW1N29Q04EILAM rank=0000235 x=1734.0 y=3516.5 length=127
200 TTTGGACATATGTTCAAGCCAAGGTTAGTACATTTCTCCTTCAGACCTCCCAGATGCACT