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Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
author pjbriggs
date Wed, 16 May 2018 07:39:16 -0400
parents 5e133b7b79a6
children 52dbe2089d14
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7:5e133b7b79a6 8:4e625d3672ba
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60 ========== ====================================================================== 60 ========== ======================================================================
61 Version Changes 61 Version Changes
62 ---------- ---------------------------------------------------------------------- 62 ---------- ----------------------------------------------------------------------
63 63
64 0.02.04.7 - Trap for errors in ``pal_finder_v0.02.04.pl`` resulting in bad
65 ranges being supplied to ``primer3_core`` for some reads via
66 ``PRIMER_PRODUCT_RANGE_SIZE`` (and enable 'bad' reads to be output
67 to a dataset); add new option to use a random subset of reads for
68 microsatellite detection.
64 0.02.04.6 - Update to get dependencies using ``conda`` when installed from the 69 0.02.04.6 - Update to get dependencies using ``conda`` when installed from the
65 toolshed (this removes the explicit dependency on Perl 5.16 70 toolshed (this removes the explicit dependency on Perl 5.16
66 introduced in 0.02.04.2, as a result the outputs from the tool are 71 introduced in 0.02.04.2, as a result the outputs from the tool are
67 now non-deterministic in some cases). 72 now non-deterministic in some cases).
68 0.02.04.5 - Update to handle large output files which can sometimes be generated 73 0.02.04.5 - Update to handle large output files which can sometimes be generated