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comparison tool_dependencies.xml @ 2:b6ccc7dd7b02 draft

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Version 0.02.04.3.
author pjbriggs
date Fri, 04 Dec 2015 07:43:30 -0500
parents 771ebe02636f
children
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1:771ebe02636f 2:b6ccc7dd7b02
62 </action> 62 </action>
63 </actions> 63 </actions>
64 </install> 64 </install>
65 <readme>primer3_core</readme> 65 <readme>primer3_core</readme>
66 </package> 66 </package>
67 <package name="biopython" version="1.65">
68 <install version="1.0">
69 <actions>
70 <action type="shell_command">pip install --install-option "--prefix=$INSTALL_DIR" https://pypi.python.org/packages/source/b/biopython/biopython-1.65.tar.gz</action>
71 <action type="set_environment">
72 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
73 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib64/python2.7/site-packages</environment_variable>
74 </action>
75 </actions>
76 </install>
77 <readme>BioPython 1.65</readme>
78 </package>
79 <package name="pandaseq" version="2.8.1">
80 <install version="1.0">
81 <actions>
82 <action type="download_by_url">https://github.com/neufeld/pandaseq/archive/v2.8.1.tar.gz</action>
83 <action type="shell_command">./autogen.sh</action>
84 <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
85 <action type="shell_command">make</action>
86 <action type="shell_command">make install</action>
87 <action type="set_environment">
88 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
89 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
90 </action>
91 </actions>
92 </install>
93 <readme>PANDASeq 2.8.1
94
95 PANDASEQ is a program to align Illumina reads, optionally
96 with PCR primers embedded in the sequence, and reconstruct
97 an overlapping sequence.
98
99 https://github.com/neufeld/pandaseq
100 </readme>
101 </package>
67 </tool_dependency> 102 </tool_dependency>