Mercurial > repos > pjbriggs > pal_finder
diff pal_finder_wrapper.xml @ 1:771ebe02636f draft
Uploaded version 0.02.04.2: fix bug that causes tool to fail when prefix includes spaces; add explicit dependency on Perl 5.16.3.
author | pjbriggs |
---|---|
date | Mon, 23 Mar 2015 07:01:37 -0400 |
parents | 3f908e7fff4f |
children | b6ccc7dd7b02 |
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--- a/pal_finder_wrapper.xml Thu Dec 11 09:23:24 2014 -0500 +++ b/pal_finder_wrapper.xml Mon Mar 23 07:01:37 2015 -0400 @@ -1,4 +1,4 @@ -<tool id="microsat_pal_finder" name="pal_finder" version="0.02.04.1"> +<tool id="microsat_pal_finder" name="pal_finder" version="0.02.04.2"> <description>Find microsatellite repeat elements sequencing reads and design PCR primers to amplify them</description> <command interpreter="bash">pal_finder_wrapper.sh #if str( $platform.platform_type ) == "illumina" @@ -13,7 +13,7 @@ #if $keep_config_file --output_config_file $output_config_file #end if - --primer-prefix $primer_prefix + --primer-prefix "$primer_prefix" --2merMinReps $min_2mer_repeats --3merMinReps $min_3mer_repeats --4merMinReps $min_4mer_repeats @@ -37,6 +37,7 @@ #end if </command> <requirements> + <requirement type="package" version="5.16.3">perl</requirement> <requirement type="package" version="0.02.04">pal_finder</requirement> <requirement type="package" version="2.0.0">primer3_core</requirement> </requirements>