Mercurial > repos > pjbriggs > pal_finder
diff README.rst @ 3:e1a14ed7a9d6 draft
Updated to version 0.02.04.4 (new pal_filter script)
author | pjbriggs |
---|---|
date | Wed, 24 Feb 2016 08:25:17 -0500 |
parents | b6ccc7dd7b02 |
children | a73c48890bde |
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--- a/README.rst Fri Dec 04 07:43:30 2015 -0500 +++ b/README.rst Wed Feb 24 08:25:17 2016 -0500 @@ -21,7 +21,7 @@ The suggested location is in a ``tools/pal_finder_wrapper/`` folder. You will then need to modify the ``tools_conf.xml`` file to tell Galaxy to offer the tool -by adding the line: +by adding the line:: <tool file="pal_finder/pal_finder_wrapper.xml" /> @@ -48,7 +48,7 @@ full path if it's not on the Galaxy user's PATH (defaults to primer3_core) If you want to run the functional tests, copy the sample test files under -sample test files under Galaxy's ``test-data/`` directory. Then: +sample test files under Galaxy's ``test-data/`` directory. Then:: ./run_tests.sh -id microsat_pal_finder @@ -60,6 +60,8 @@ ========== ====================================================================== Version Changes ---------- ---------------------------------------------------------------------- +0.02.04.4 - Update to the filter script (``pal_filter.py``) which removes some + columns from the output assembly file. 0.02.04.3 - Update to the Illumina filtering script from Graeme Fox (including new option to run ``PANDASeq`` assembly/QC steps), and corresponding update to the tool; add support for input FASTQs to be a dataset