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view test-data/illuminaPE_r2_bad_ranges.fq @ 8:4e625d3672ba draft

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Pal_finder tool version 0.02.04.7: add detection/reporting of bad ranges; enable subset of reads to be used; check n-mers.
author pjbriggs
date Wed, 16 May 2018 07:39:16 -0400
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@M00879:99:000000000-AH9KG:1:2107:10006:2535 2:N:0:TAAGGCGA+TAGATCGC
CCTCCCAGATGTGAGGTCAGGAATCTCGTCTGGTGTCTATATACTATTGCTACACAAAAATTTGTCAGTTGCCCTGAAGATGACTTGAAATAAAGTCGAAAGCTCGGAGCTGCTCGTTTTCGTCTCCTTTCCAGTGAGATTATACTACATATATATATATATAT
+
CCCCCGGGGGFGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8FFFGGGGGGFGGGGGGGCEFFGGGGGFGGGGGGGGGGGGGGGFGFCEGGFGG8EFEFDFGEFGFFGGCFGGFAFF,9AFDGGGGGGGGGGGGGGEADDFGFEA
@M00879:99:000000000-AH9KG:1:2107:10032:7900 2:N:0:TAAGGCGA+TAGATCGC
CTACAGGGGGCCGAGCACAGAGACTGGTTGATGTATAGAGTTGCTATACTCCTATAGTCCCCCATCGCTTCTATAGCATCTTTCGTGTAGGTGTGTCTATAATGATTGGACATCGAGATAGAAAGGGGACCGGATTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGCGAGGAGATAGATAAATACATCGAT
+
CCCCCGGGGDGGGEGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGFGGGGGGGGGGGGGGGGGGGCGFGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGFFGGGFGDGGGFGFGGGGGGGGGGEGFFGFFCGFGGGCFG9FFGGGGFCFGGGGGGGGG8DAFGFFGFGGDGDFGFCFFD72DAFF>?BCFFF5>9A>DFFFFFF*):494?>BFEE4<*9*@:=?*-(-
@M00879:99:000000000-AH9KG:1:2107:10061:6317 2:N:0:TAAGGCGA+TAGATCGC
GCCTCGGGACCTTGGCACGCCGCCTCTCCCATAGATGCACCATGAGATCCGTGCAACGGCACAGATCTCTTCTACGGAACTTTTGCCACACCTCACTTCACCTTCTTGCCTTATTCTGCACCACCTGCAGCAGCAGCAGCAGCAGCAGCTCGCCCCGAGTTACATCTATGTACTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCCCTCCCTCTCCTCTCACCCCACACTCACACCCGC
+
CCCCCFGGGGGGGFFGGGGGGGGGGGGGGGGGGFGGGFEGGGGEGFGGGGGGGGGGGEGGGGGGGGGCGFFGFGGFG@FGGFEF9FGGGCGGEFEFGGGDGG@FE?EEFGGGGG,EE,EFGGFGGFDG,@FFFFG8D8=E8>EEEGC=D=D6CEGC61C=8:ECFG8AA9<2CCC<C?C+=0==DAF9C7;;@0;0@09*@*9*)3;):/;.7.>*7):(54>3-(0(*(0*-(511(6(/(6)6/(,(
@M00879:99:000000000-AH9KG:1:2107:10072:8112 2:N:0:TAAGGCGA+TAGATCGC
GTTCCTGTTATCTTCTTGTTGCTTGGCCTTCGTCACTACATGTAACATGCTGGTAAGCTTGACCGTTGTCATTCCCTGTAACAAACTGATAAGCTTTACCGATGTCATTACATGTAACCAGTTGGTAAGCCTAGCCTTTGTCATCCCATGTAAGAAACTGGTAAGCTTGACAGTCGTCATTCCATATAACAAGCTGAGATAACTTTCACAACCAACACACACACACACACACACACCTGTCTCCTATAC
+
CCCCCGGGGGGGGGGGGFFGFGGGG7FFGGGGGGGGGGGGGFGFFFAEGGGCFFG@AGGGC,EFGGGGGGGG@EEGGGGFGGFGGGFGGFGCFGGGGGGGGCEEGGCFEFGDEFGGFG,CFFFEGGGDG9EFFFGGGGFAFGGGGG84E=EFGGG;AGDDFFFGGFGG8=DAFGFG=D88FFG@9D@@FDD+;D56D?FFFFFFD=7*;2:)=855)=DF=>=AAD==@DDA)=@@5)):)3;9A***9
@M00879:99:000000000-AH9KG:1:2107:14372:5471 2:N:0:TAAGGCGA+TAGATCGC
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
+
ACCCCFGE<FFFGGGGCFFFEF@EGGGGGGGGGGG
@M00879:99:000000000-AH9KG:1:2107:10084:6474 2:N:0:TAAGGCGA+TAGATCGC
ATATATATGTATATATATATATATATAGATAGATAGATAGATAGATAGATAGATAGATATAAAACACGTAAACCTCGACCAGCCAAGATTTGAACTCTGGTCCAGAGCGTGACCAGCGGGAGTGCTACCGTTCGACTATGATCACCCCTAATAGGGAACTGACTATTCAGATACTTAGGTAATTG
+
CCCCCGGGGGGGGGGGGGGGGGGGCFGFGGGCGGGFGFGFGCFGGFGGGGGGGGGGGGGGGGGGGGFCFFFGGGG<FEFGGFCEFGGGGGGFFAGFGGCCFGGEDGFDGGGGGGGGGG7@FG=AEFGGGGDGC8EGGGGFFEFEGGGGGGGDCF8@FE+==AF9=FFGGFGDGFDA=?DDG+3?9