view test-data/illuminaPE_microsats.out.re_match @ 9:52dbe2089d14 draft default tip

Version 0.02.04.8 (update fastq subsetting).
author pjbriggs
date Wed, 04 Jul 2018 06:05:52 -0400
parents 5e133b7b79a6
children
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readPairID\	Motifs\(bases\)\	Bases\ in\ all\ Motifs\	Possible\ Extended\	Possible\ Spanning\	Primers\ found\ \(1\=y\,0\=n\)\	F\ Primer\ Name\	Forward\ Primer\	R\ Primer\ Name\	Reverse\ Primer\	Amplicon\ Motifs\	Number\ motif\ bases\ in\ amplicon\	Primers\ on\ sep\ reads\	Extend\ with\ primers\	Spand\ with\ primers\	Occurances\ of\ Forward\ Primer\ in\ Reads\	Occurances\ of\ Reverse\ Primer\ in\ Reads\	Occurances\ of\ Amplifiable\ Primer\ Pair\ in\ Reads\	Occurances\ of\ Amplifiable\ Primer\ Pair\ in\ PALs
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:10979\:1695\	(AG|TC)\(14\)\ \	14\	\	\	1\	test\_.*\	TTCTCCCACTATATTTTGCATTGG\	test\_.*\	TCCAGACTGAAGCTACCCTGG\	(AG|TC)\(14\)\ \	14\	1\	\	\	1\	1\	1\	1
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:17449\:1584\	(AC|TG)\(36\)\ \	36\	\	\	0\	\	\	\	\	\	\	\	\	\	\	\	\	
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:19063\:1614\	AT\(14\)\ AT\(14\)\ AT\(14\)\ AT\(14\)\ \	56\	\	\	0\	\	\	\	\	\	\	\	\	\	\	\	\	
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:1978\:1220\	(AC|TG)\(12\)\ \	12\	\	\	1\	test\_.*\	GCAGTAAACAAAGGCAAAGGG\	test\_.*\	CCTGGGCAGAGGTGTTCC\	(AC|TG)\(12\)\ \	12\	1\	\	\	1\	1\	1\	1
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:5626\:1554\	AT\(14\)\ (AC|TG)\(16\)\ (AC|TG)\(16\)\ AT\(12\)\ \	58\	\	\	0\	\	\	\	\	\	\	\	\	\	\	\	\	
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:5879\:1238\	AT\(12\)\ \	12\	\	\	0\	\	\	\	\	\	\	\	\	\	\	\	\	
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:6204\:1090\	(AG|TC)\(12\)\ \	12\	\	\	0\	\	\	\	\	\	\	\	\	\	\	\	\	
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:8044\:1926\	AT\(12\)\ \	12\	\	\	0\	\	\	\	\	\	\	\	\	\	\	\	\	
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:8157\:1636\	(AC|TG)\(12\)\ \	12\	\	\	1\	test\_.*\	AAGTACAGTGGGGAGGCTGG\	test\_.*\	TTTTCTACACAGCTCAAGTAGCCC\	(AC|TG)\(12\)\ \	12\	1\	\	\	1\	1\	1\	1
ILLUMINA\-545855\:49\:FC61RLR\:2\:1\:8899\:1514\	(AC|TG)\(12\)\ (AC|TG)\(12\)\ \	24\	\	\	1\	test\_.*\	TCTTTATCTAAACACATCCTGAAATACC\	test\_.*\	AAACGCAATTATTTTGAGATGTCC\	(AC|TG)\(12\)\ (AC|TG)\(12\)\ \	24\	1\	\	\	1\	2\	1\	1