Mercurial > repos > pjbriggs > trimmomatic

annotate test-data/trimmomatic_r2_paired_maxinfo.fastq @ 4:14d05f2d511d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Version that supports Trimmomatic 0.36.
author pjbriggs
date Thu, 14 Jul 2016 09:17:38 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
1 @MISEQ:1:000000000-A2Y1L:1:1101:19264:2433 2:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
2 GCCGATATGCAGATGCCGTTGATTGCTGCCAGCATAGCAGCCATTGCCGGCATATCCTTTGTGACTGTGCGCCGACGCAAGAAGGCGGCCCAGATAACCTAGCCCAGAAACG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
3 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
4 ??A??ABBDDDDDDDDFFEEEFHIIIIHHIIHIFHIIHHHFHHIIIIIHHHFHHIIIIIIFFFHHIIHGDEHHAAEHHHHFHHHHD=EBBEEEEEFFFFEEEECEFFEEFFF
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
5 @MISEQ:1:000000000-A2Y1L:1:1101:18667:2435 2:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
6 GATGACATCAGCACAGGTTCCGCTTCCGCTGTCGCAACGACGTGGCTGCCATCGATTATATTCAATTCTGAGTGCTGCCGTAGGGCTAGATGTAAGACTCACGTTCGGCGACCAGATTAGTCGGTAGTGGCATG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
7 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
8 ?????BBBDDDDDDDDGFFGGGHHHHIHHHHHHHIHHHHIHBCEEHFFHHHIIHFHHHIIIIIIIHIFBGFGFHHHHIHE@EEEHHFFHHFF?CFHHHHHGGGGGGGGGGGGGGGGGGGECGGG;EE:CEGGG?
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
9 @MISEQ:1:000000000-A2Y1L:1:1101:17523:2436 2:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
10 GAATATAGAAACGGGAGTATAGTGGTAACC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
11 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
12 ??AAABBBDDDDDEDDGGCFGGHHIFFHHH
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
13 @MISEQ:1:000000000-A2Y1L:1:1101:15489:2437 2:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
14 GTCCACGTGAAATCCCGAGCGTCCCTCTCCCTCCCGAGAACCCGGTCTATATCCCACGATTTTTG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
15 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
16 ????9B???AD9?BDDEEDDDDHHHHHFHFHFFHHHHHHHHHEHH>CEGHHFGHHGHH=FHHHHC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
17 @MISEQ:1:000000000-A2Y1L:1:1101:18851:2442 2:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
18 TCTCCTCAGTACGGGGGAGGAGGTTCGCTCGGCGGACGTGCGGCCCTACGCCAGACTCTACCACATGGTTCAGCAGGAGCTGGAGCACCGCGCTGTGTCCGGGGACTGGGAATACACCATCAGCCCCGGCGAGGAGTGGCAAGAGA
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
19 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
20 A??A?BBBDDDDDDDDGGGGGGHEFHHGEHHHIHEHHHHHDHBEHGFFFEGGDEEDGGGGGEGGEECE?EGCEGEGGGCEEEGGCEEGG4D;;4AGGGGGG8>GGA?EGGGEEGEEGGGCGGEGEGGGGD8<AADECECEGG?CCC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
21 @MISEQ:1:000000000-A2Y1L:1:1101:15290:2442 2:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
22 GCGTGGATTTGATTCGGTTTATGGGGCGCGGCCGCTGAGGCGGGTCATTCAGACGGAG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
23 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
24 ?????@?BDDDDDDDDFEEEFFHIIHEHHHHDHHHHHEHHHHHH8ADFFFDFFD1D;>
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
25 @MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 2:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
26 GAGTTACTATTACAGAGTGGAGCTAATGTACTGGCAGTTGACTGCAAAAGAAATGCTCCAATTCATGTTGCATGTGCAAATATGAGCTTAGAGTGTTTAAAGATAATTTTGTGCCACAAAAAATGCAACCCAAACCAACAAAATGCAGTGGGAGACACTCCACTCCACACCT
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
27 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
28 ?????BBBDDDDDDDDGCFGFGIIIIIHFHIIIIHIHFG=EHHIGIIIIFHIHDGHGHHHIHIH=CGHGGHFHHHFHFGHHFH/ACDFGG?FE?CDFFHHHHHIIHFHHI>CEDGFHHHHHHHHDFHHFHHHFFAFFGGGGGGEDEG>>DACC;?EGG>CEEA>AEACCEE?
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
29 @MISEQ:1:000000000-A2Y1L:1:1101:15892:2446 2:N:0:NAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
30 GTATTGCTGGCACCATCAGTCACCGTGTAGTGTATTCTATCGATTCCGTCACGCTGGCCCTTGAGCGTGCCCGAATCATACGTTATGGTGGTACCTGATACCGTGGCACTAGTGCCGTCGGTGTCTGCGCCATCCG
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
31 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
32 ?????BBBDDDDDDDDGGGGGGIIHIIFHHHIHHIFHGHGGHHIHIIDEFFHEF@DFHIIHIIIGHACDCFFHHHIHIIHIHGHHHBGFGEEHHHHFHFFHHDFDCEGGFGGFGGG@DBEEEEGC>CEEGGGGGGE
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
33 @MISEQ:1:000000000-A2Y1L:1:1101:17903:2450 2:N:0:TAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
34 GGCCAACACTGTGGTCACTATCTCTGGCACTGGTCTGCTACCACATGGAGTTGACACCGGAGACCCAATCACCACAGCAACAGTGTGGATTGACCACACCCCCTGCACCTGTCTCTTATACACATCTGACGCTGCCGACGAGCGA
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
35 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
36 55<?????DDDBBDDBFFFFFFCHHIIHHIIIIIIIHGHHIIIIHHGHIIHFHHIIIIHHHCDHIIIHFFHIIIIICFFHIHECGCGEHIH=FHHHHHHHHHHF;FFFFFDDFFFFFFFEFFFFEFEBDFAEEAEE@EEDD>DDD
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
37 @MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 2:N:0:TAAGGCGATAGATCGC
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
38 GAGGGGAGGAGGGGAAGGGAGAGGGGAAGAGAGGAGAGGAGAGGAGGAGGAGAGA
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
39 +
14d05f2d511d Version that supports Trimmomatic 0.36.
pjbriggs
parents:
diff changeset
40 ?????@9@B?B?BBBBEEEFB@@EEHEC?BF-CE@DDEH,5+5C,>@+CE+<?=E