Mercurial > repos > pjbriggs > trimmomatic

annotate test-data/trimmomatic_pe_r2_unpaired_out1.fastqillumina @ 15:32f1f56bd970 draft

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Updated for Trimmomatic 0.39 and adds quality score options.
author pjbriggs
date Thu, 02 Mar 2023 15:24:24 +0000
parents 59054f086eca
children
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11
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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1 @MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 2:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
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diff changeset
2 GAGTTACTATTACAGAGTGGAGCTAATGTACTGGCAGTTGACTGCAAAAGAAATGCTCCAATTCATGTTGCATGTGCAAATATGAGCTTAGAGTGTTTAAAGATAATTTTGTGCCACAAAAAATGCAACCCAAACCAACAAAATGCAGTGGGAGACACTCCACTCCACACCTTATGCAGTTTGGGGACTTGTGATATGAGAATACTACCTGTCTCTTATACACA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
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3 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
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4 ^^^^^aaaccccccccfbefefhhhhhgeghhhhghgef\dgghfhhhheghgcfgfggghghg\bfgffgegggegefggegN`bceff^ed^bceeggggghhgeggh]bdcfeggggggggceggegggee`eeffffffdcdf]]c`bbZ^dff]bdd`]`d`bbdd^YbYYbbYYYbYbd[b[XbY^b^I^bddbbbIYb^b^dY^YbYbYbbbbdY^b
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
5 @MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 2:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
6 GAGGGGAGGAGGGGAAGGGAGAGGGGAAGAGAGGAGAGGAG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
7 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
8 ^^^^^_X_a^a^aaaadddea__ddgdb^aeLbd_ccdgKT