Mercurial > repos > pjbriggs > trimmomatic
annotate test-data/trimmomatic_se_out1.err @ 15:32f1f56bd970 draft
Updated for Trimmomatic 0.39 and adds quality score options.
author | pjbriggs |
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date | Thu, 02 Mar 2023 15:24:24 +0000 |
parents | 59054f086eca |
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rev | line source |
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11
59054f086eca
Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff
changeset
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1 TrimmomaticSE: Started with arguments: |
59054f086eca
Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff
changeset
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2 -threads 1 fastq_in.fastqsanger fastq_out.fastqsanger SLIDINGWINDOW:4:20 -trimlog trimlog |
59054f086eca
Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff
changeset
|
3 Quality encoding detected as phred33 |
59054f086eca
Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff
changeset
|
4 Input Reads: 10 Surviving: 8 (80.00%) Dropped: 2 (20.00%) |
59054f086eca
Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff
changeset
|
5 TrimmomaticSE: Completed successfully |