Mercurial > repos > pjbriggs > trimmomatic

annotate test-data/trimmomatic_se_out1.err @ 12:51b771646466 draft

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Uploaded fix from Marius van den Beek (make readlink more portable)
author pjbriggs
date Mon, 17 Dec 2018 04:39:08 -0500
parents 59054f086eca
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
1 TrimmomaticSE: Started with arguments:
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
2 -threads 1 fastq_in.fastqsanger fastq_out.fastqsanger SLIDINGWINDOW:4:20 -trimlog trimlog
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
3 Quality encoding detected as phred33
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
4 Input Reads: 10 Surviving: 8 (80.00%) Dropped: 2 (20.00%)
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
pjbriggs
parents:
diff changeset
5 TrimmomaticSE: Completed successfully