Mercurial > repos > pjbriggs > trimmomatic

annotate test-data/Illumina_SG_R1.fastqillumina @ 13:898b67846b47 draft

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Updated to Trimmomatic 0.38.
author pjbriggs
date Mon, 08 Jul 2019 07:09:10 -0400
parents 59054f086eca
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
11
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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1 @MISEQ:1:000000000-A2Y1L:1:1101:19264:2433 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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2 AGATAGCCGAAGATAAAGAGNTCATAACCGTAAAGGCCAGAGACGAGAACCACTCGCAGGCAAGGTTTGCAAGCCTCGCCAAGAATATTATAGACCCGCTTGCCAACGACTGGCATTACATCACCGTAAAGAAGGTAGGCAAGAATCACTGGATCAGCATAACAGATGAGGGTAGAGACGCCGTATCGTTTCTGGGCTAGGTTATCTGGGCCGCCTTCTTGCGTCGGCGCACAGTCACAAAGGAAATGCC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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3 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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4 ^^^^^aaa_aaaa^aaeeeeBUUd`egggbdedcefgggge_ceg`bdde_eceggggdddggge^efdgegcdefggbdgdeggggeeebeceeeeaddddddddddda^dddddddddddaadd^bd^Y`bbbI^^b``ddbdY^db`Y^`I^dddd^dddd^O``bN^WHOOIIOYWFWZSWI^WNW^`ddddWY`IWIOYIIOIIY^b^SWO^dd^`BBBBBBBBBBBBBBBBBBBBBBBBBBBBB
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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5 @MISEQ:1:000000000-A2Y1L:1:1101:18667:2435 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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6 ATATATTCATCCGCCATTATNAGAGTCCGATTACTTTAGAACAGTGCCGCGAATCCTTCGTCAACTGTAATCCAAGCGACATTGGTTCGATTAGCACGCATGAGGCACGAGATCTACGCGTATCTCTGGTAGATACACCAGGAGGGATGAGAGTTGAGCGAGTTAGCTGTGGCCAGAGAGATGGGTCTAATCGTAGTCTACAACTGGGAGTCACATGCCACTACCGACTAATCTGGTCGCCGAACGGGAG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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7 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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8 ^^^^^aaacccc`cccd_eeBUUbebeggadgghhhghhggeggfgggggggggghghgheggggggdfeghgghhhggggggggbegggggggeeeeeeddddeededdaadddeed_dWZddeeedeIY`dddddeeed``d`^`^`b`de^bddedcQ[M^``dbd`dedddW^^`W^b``dP^ddd^`dIWWW`ddddeddee`W`W^`bd`ddd`d^bY^^dcQ[dYbIY^IYW^dc[]WMHW^[
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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9 @MISEQ:1:000000000-A2Y1L:1:1101:17523:2436 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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10 CATCACTACCGCTCAGGAATNTGACGGCAGTCTTAGCGGCGCTCTAGTGCGGGAGGCCGTATCTTGGAATAAGGTGTCGTCAAATGCAAGGCAGGTAACCCTACACGCCGAGGTTACCACTATACTCCCGTTTCTATATTCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATATCGGTTGCCGTCTTCTGCTTGAAAAAAAAAAACAAACAAGAGAAGACGACGTACTGCACCACCA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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11 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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12 ^[K[^aaaaaaaaaaaeeeeBU`bdbbdbVWbd\bfgdgVbgbgefg`cfgggbbbggd[cegeeeeceeeeeecececcdddddddddb`ddddZ^adddaddabdZbZSWZH^``bbddd^``^Y^dWW`ddYbd^``ddddY^IIIOYI^^``dddddd`^MWZdBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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13 @MISEQ:1:000000000-A2Y1L:1:1101:15489:2437 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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14 GAGCAGTCGGGCTCAGCGCTNTGCAAATTCTAGTTAGAAACTCACAGTTCTGACAAGCCTTAGGTCAGTGTGATTGGCGGTTAGTCAACTCGGAGAAAGCGTCTTTTCCCGACTTGAATGGTTTGTCCCGACAGTTCGTTGACTGGGGTTTCGTCAGCCTTGAGCGGGGTTCCATCCATCTTTATCGCGCCTTGGGAAAGTAGTCGGCGGGCTTCGGGGTTGGGTGAGGGCAATCCTTGTTCGGTCAAAA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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15 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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16 T\\\\]N[______]_bbbdBUU]`bddddfffffffeeedeceeeee\bcdeeeedcdeeeeeb\`daeL``_bdZdbcT[T[\\b\\cdddHWRbc\\_JS_cddI[cP[HP_ZWWWIXOZIPXWW_HQHFSZ\ddBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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17 @MISEQ:1:000000000-A2Y1L:1:1101:18851:2442 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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18 GGTATCCCCCGGCAGTGAGGATGGAGCCATGGTCTGCATCATACTCACCGTAGGTGAGAATATCCACGTCCTTCGACTCCTGGGTGCCGTCTATGGTGCCCTCTGTTACCAGGCAGTGACGGAGGACATGGTGAGGTTTCAGTACCTCTGGCCCGGCCTGGGTCACAGGGTCAGACTGGGTGACCTTCATGAAGCGTCTGGTGACGTAGCTGTGATAGTCCAGCTTGGCAACCTCTGCTGGTTGCAGAGG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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19 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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20 ^^K[^aaaccccccc[eee_ebZeeeadegggbccggfgggcfgggeggd`^dd`ddgcdegggggedbegggegcgddggbegVbdegcdggbeggegge\eeececeeeeddddccdeddd[aabdabdK\\`dPYY``ddbddI^I``dee^^]c^HWHY`W^db^WIIIOIOOYW^IHOIPY^b`bbY``^ZH^dde`ddbdWWIHP`IPOIPYIP^Y`bYY`HIYYIW`bddd^BBBBBBBBBBB
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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21 @MISEQ:1:000000000-A2Y1L:1:1101:15290:2442 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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22 AAAATAATCCTAAAAAATAACCTCTATGCCGCCGAACGCTCCGCCTCTATCTTCGTAAAAACTATCTTCTCCTCCTCACCTCCATAATCAAGCATCAAGCGATCGCCCTCCGCCAACTCACCCCGCAAAATCTTATCCGCTAGCGGATTCTCAATCTCCGTCTGAATGACCCGCCTCAGCGGCCGCGCCCCATAAACCGAATCAAATCCACGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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23 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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24 ^^^^^aaaccccccccffffffhhhggeeggggggggggdggdggggghhgggggedghhhgghgghghghhhhhggggggggggggggggcggggggggfdcefffffffZbdfdfbdfffffW]ffffdffddbdffffcWdcff`dfddffbdYbffWbddff^^^bdd[cfWbbI^^]cfMW[`ffffbddfIbQ[fbbdbdIY^bd^bdXbYbYbY^bIPIIOPOYI^dWQFQ[fbdBBBBBBBB
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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25 @MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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26 GTAGTATTCTCATATCACAAGTCCCCAAACTGCATAAGGTGTGGAGTGGAGTGTCTCCCACTGCATTTTGTTGGTTTGGGTTGCATTTTTTGTGGCACAAAATTATCTTTAAACACTCTAAGCTCATATTTGCACATGCAACATGAATTGGAGCATTTCTTTTGCAGTCAACTGCCAGTACATTAACTCCACTCTGTAATAGTAAATCCTGTCTCTTATCCACATCTCCGAGCCCACGAGAATAAGGCGA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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27 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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28 TTKKT^Xaaaaa[[aaeeeeeeeggeadegegggecebeO`X_]XcXcefZeggggfggeeeeggggdbcbdee]dedddd_bcedeggfggggdgcfggegcegeggggeeggg_ecc^^ceeeecaaddadddddddddddddddddKZ^bdbZbddddba^bddddddddbddd^b^bdIO^IIINYYY^YIN^Y`YYIINYIY`bd^OYYY`YYIIIOOYYIN^bWWW^^dddBBBBBBBBBBBBB
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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29 @MISEQ:1:000000000-A2Y1L:1:1101:15892:2446 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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30 CTTCCCCACGGCCCAGACACAAGAGACGACCTCCATAAATCTTTTAGAGGGTGACCGCATCTCCGACGCAAACCAGGACGCCGATACCCTCGTGGTGGTGTTCGACCGTACGGATGGCGCAGACACCGACGGCACTAGTGCCACGGTATCAGGTACCACCATAACGTATGATTCGGGCACGCTCAAGGGCCAGCGTGACGGAATCGATAGAATACACTACACGGTGACTGATGGGGCCAGCCAAACCTGT
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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31 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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32 ^^^^^aaacacccccceeeeeeghghgggggghgheffgegggghheghgg^ddfggggggLdfdggbdggggg_eceedeeT_dddeededZ`dbbdZ`ddddd`^W^`dccddceecdQ]]ddee[[[Q]c^cdddIYb^``[]W`debddY^b^ddd^bdeddO^Yd^`bddbcW]dd]HW]dYbddddddcMH^`d^^`^Y`^I^^YbO^bbd^```YWWMWW^YYbYb^IWHS`^`BBBBBBBBB
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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33 @MISEQ:1:000000000-A2Y1L:1:1101:17903:2450 1:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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34 GTGCAGGGGGTGTGGTCAATCCACACTGTTGCTGAGGTGATTGGGTCTCCGGGGTCAACTCCATGAGGTAGCAGACCAGTGCCAGAGATAGTGACCACAGTGTTGGCCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAGACTTTTAAAAAACCGATCTACACCTTGACAGGCTATTAAAGGAAACTGGCCTGGTATCACAG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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35 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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36 \T\\\[]JT[T[JT\_bbZWbdddddZLW`becdMVbWVbeL`]d]d\eedII]]T`dc`ddcLTLT``cb\cJ\ccd[JJRJbbcXcbcJ\_RYcddddcc[_cIXcdXXZ_Z_dd_Z__dddV__W_Y___ZXddFSSX^[[dZ\d[[ZWGUZ^BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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37 @MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 1:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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38 TCTCAGATGAGCATGCAGCAGCCCAGACTCGCCCCACGCAGTTTGCCAACCACAAGGCCATCCTCGGCCTGTCAGCCTGCCCCTCCCTCCCTCACCAGCTAGCCTCCTATGCCGCGGTAGGGGGCTCAAAGAGATTCAGACACAGCCACGTAATCATGTTACTTGCCCATTCCCCCCTCCCTCCTCCTCCTCTCCCCCCCTCTCTTCCCCTCTCCCCTCCCCTCCTCCCCTCCTGTCCCTTATACACATC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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39 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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40 \KK[\]]]_____X__bbdd_ddJJJUbWLJJbdbdJ]cbb]__deeeedddcddTTJ`bdeZLbJ]ddJJba`LLT`JJbcbJS[[J\cd\bcdd_J_XcYcJSZ_BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB