annotate tool_dependencies.xml @ 2:a60283899c6d draft

Version 0.32.2: use GALAXY_SLOTS to set number of threads.
author pjbriggs
date Wed, 22 Apr 2015 09:36:27 -0400
parents 3358c3d30143
children 14d05f2d511d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
1 <?xml version="1.0"?>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
2 <tool_dependency>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
3 <package name="trimmomatic" version="0.32">
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
4 <install version="1.0">
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
5 <actions>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
6 <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip</action>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
7 <action type="move_file">
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
8 <source>trimmomatic-0.32.jar</source>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
9 <destination>$INSTALL_DIR</destination>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
10 </action>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
11 <action type="move_directory_files">
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
12 <source_directory>adapters</source_directory>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
13 <destination_directory>$INSTALL_DIR/adapters</destination_directory>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
14 </action>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
15 <action type="set_environment">
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
16 <environment_variable name="TRIMMOMATIC_DIR" action="set_to">$INSTALL_DIR</environment_variable>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
17 </action>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
18 <action type="set_environment">
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
19 <environment_variable name="TRIMMOMATIC_ADAPTERS_DIR" action="set_to">$INSTALL_DIR/adapters</environment_variable>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
20 </action>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
21 </actions>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
22 </install>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
23 <readme>Trimmomatic requires the Java Runtime Environment
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
24 </readme>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
25 </package>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
26 </tool_dependency>
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
27