Mercurial > repos > pjbriggs > trimmomatic

annotate test-data/trimmomatic_pe_r2_paired_out1.fastq @ 10:dfa082f84068 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded version 0.36.5 (use conda to resolve tool dependencies)
author pjbriggs
date Mon, 05 Mar 2018 10:13:48 -0500
parents 3358c3d30143
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
1 @MISEQ:1:000000000-A2Y1L:1:1101:19264:2433 2:N:0:NAAGGCGATAGATCGC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
2 GCCGATATGCAGATGCCGTTGATTGCTGCCAGCATAGCAGCCATTGCCGGCATATCCTTTGTGACTGTGCGCCGACGCAAGAAGGCGGCCCAGATAACCTAGCCCAGAAACGATACGGCGTCTCTACCCTCATCTGTTATGCTGATCCAGTGATTCTTGCCTACCTTCTTTACGGTGATGTAATGCCAGTCGTTGGCAAG
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
3 +
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
4 ??A??ABBDDDDDDDDFFEEEFHIIIIHHIIHIFHIIHHHFHHIIIIIHHHFHHIIIIIIFFFHHIIHGDEHHAAEHHHHFHHHHD=EBBEEEEEFFFFEEEECEFFEEFFF8*??AA?;>DEEEFFFF*?8AECFEFFFFFFEAEEECFFFCEEEFFFFFFEEFEACEEC?CAACEFEEEFE?0?EACAAAEEAACEEA
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
5 @MISEQ:1:000000000-A2Y1L:1:1101:18667:2435 2:N:0:NAAGGCGATAGATCGC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
6 GATGACATCAGCACAGGTTCCGCTTCCGCTGTCGCAACGACGTGGCTGCCATCGATTATATTCAATTCTGAGTGCTGCCGTAGGGCTAGATGTAAGACTCACGTTCGGCGACCAGATTAGTCGGTAGTGGCATG
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
7 +
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
8 ?????BBBDDDDDDDDGFFGGGHHHHIHHHHHHHIHHHHIHBCEEHFFHHHIIHFHHHIIIIIIIHIFBGFGFHHHHIHE@EEEHHFFHHFF?CFHHHHHGGGGGGGGGGGGGGGGGGGECGGG;EE:CEGGG?
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
9 @MISEQ:1:000000000-A2Y1L:1:1101:17523:2436 2:N:0:NAAGGCGATAGATCGC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
10 GAATATAGAAACGGGAGTATAGTGGTAACC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
11 +
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
12 ??AAABBBDDDDDEDDGGCFGGHHIFFHHH
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
13 @MISEQ:1:000000000-A2Y1L:1:1101:15489:2437 2:N:0:NAAGGCGATAGATCGC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
14 GTCCACGTGAAATCCCGAGCGTCCCTCTCCCTCCCGAGAACCCGGTCTATATCCCACGATTTTTGACCGAACAAGGATTGACCTCATCCAACTCCGAAGCCCGCC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
15 +
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
16 ????9B???AD9?BDDEEDDDDHHHHHFHFHFFHHHHHHHHHEHH>CEGHHFGHHGHH=FHHHHC+CGEBCC<CF@,4CF@CFBFFFFDF?B4BD@@D)>CE6BB
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
17 @MISEQ:1:000000000-A2Y1L:1:1101:18851:2442 2:N:0:NAAGGCGATAGATCGC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
18 TCTCCTCAGTACGGGGGAGGAGGTTCGCTCGGCGGACGTGCGGCCCTACGCCAGACTCTACCACATGGTTCAGCAGGAGCTGGAGCACCGCGCTGTGTCCGGGGACTGGGAATACACCATCAGCCCCGGCGAGGAGTGGCAAGAGACGGA
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
19 +
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
20 A??A?BBBDDDDDDDDGGGGGGHEFHHGEHHHIHEHHHHHDHBEHGFFFEGGDEEDGGGGGEGGEECE?EGCEGEGGGCEEEGGCEEGG4D;;4AGGGGGG8>GGA?EGGGEEGEEGGGCGGEGEGGGGD8<AADECECEGG?CCC:8CC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
21 @MISEQ:1:000000000-A2Y1L:1:1101:15290:2442 2:N:0:NAAGGCGATAGATCGC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
22 GCGTGGATTTGATTCGGTTTATGGGGCGCGGCCGCTGAGGCGGGTCATTCAGACGGAGATT
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
23 +
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
24 ?????@?BDDDDDDDDFEEEFFHIIHEHHHHDHHHHHEHHHHHH8ADFFFDFFD1D;>1,;
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
25 @MISEQ:1:000000000-A2Y1L:1:1101:15892:2446 2:N:0:NAAGGCGATAGATCGC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
26 GTATTGCTGGCACCATCAGTCACCGTGTAGTGTATTCTATCGATTCCGTCACGCTGGCCCTTGAGCGTGCCCGAATCATACGTTATGGTGGTACCTGATACCGTGGCACTAGTGCCGTCGGTGTCTGCGCCATCCGTACGGTCGAACACCACCACGAGGGTATCGGCG
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
27 +
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
28 ?????BBBDDDDDDDDGGGGGGIIHIIFHHHIHHIFHGHGGHHIHIIDEFFHEF@DFHIIHIIIGHACDCFFHHHIHIIHIHGHHHBGFGEEHHHHFHFFHHDFDCEGGFGGFGGG@DBEEEEGC>CEEGGGGGGE0?CDGGGD>EE2CE8CEGEE<>>>):CEEGDA
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
29 @MISEQ:1:000000000-A2Y1L:1:1101:17903:2450 2:N:0:TAAGGCGATAGATCGC
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
30 GGCCAACACTGTGGTCACTATCTCTGGCACTGGTCTGCTACCACATGGAGTTGACACCGGAGACCCAATCACCACAGCAACAGTGTGGATTGACCACACCCCCTGCACCTGTCTCTTATACACATCTGACGCTGCCGACGAGCGATCTAG
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
31 +
3358c3d30143 Uploaded initial version.
pjbriggs
parents:
diff changeset
32 55<?????DDDBBDDBFFFFFFCHHIIHHIIIIIIIHGHHIIIIHHGHIIHFHHIIIIHHHCDHIIIHFFHIIIIICFFHIHECGCGEHIH=FHHHHHHHHHHF;FFFFFDDFFFFFFFEFFFFEFEBDFAEEAEE@EEDD>DDD880:?