Mercurial > repos > pjbriggs > trimmomatic

annotate test-data/Illumina_SG_R1.fastqsolexa @ 17:b9aaed85cbd1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/packages/trimmomatic commit 6151dc895107d028c525362fb16b91388e10f2f2
author iuc
date Wed, 24 Jan 2024 08:56:01 +0000
parents 59054f086eca
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
11
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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1 @MISEQ:1:000000000-A2Y1L:1:1101:19264:2433 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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2 AGATAGCCGAAGATAAAGAGNTCATAACCGTAAAGGCCAGAGACGAGAACCACTCGCAGGCAAGGTTTGCAAGCCTCGCCAAGAATATTATAGACCCGCTTGCCAACGACTGGCATTACATCACCGTAAAGAAGGTAGGCAAGAATCACTGGATCAGCATAACAGATGAGGGTAGAGACGCCGTATCGTTTCTGGGCTAGGTTATCTGGGCCGCCTTCTTGCGTCGGCGCACAGTCACAAAGGAAATGCC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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3 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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4 ^^^^^aaa_aaaa^aaeeee>UUd`egggbdedcefgggge_ceg`bdde_eceggggdddggge^efdgegcdefggbdgdeggggeeebeceeeeaddddddddddda^dddddddddddaadd^bd^Y`bbbH^^b``ddbdY^db`Y^`H^dddd^dddd^O``bN^WGOOHHOYWEWZSWH^WNW^`ddddWY`HWHOYHHOHHY^b^SWO^dd^`>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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5 @MISEQ:1:000000000-A2Y1L:1:1101:18667:2435 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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6 ATATATTCATCCGCCATTATNAGAGTCCGATTACTTTAGAACAGTGCCGCGAATCCTTCGTCAACTGTAATCCAAGCGACATTGGTTCGATTAGCACGCATGAGGCACGAGATCTACGCGTATCTCTGGTAGATACACCAGGAGGGATGAGAGTTGAGCGAGTTAGCTGTGGCCAGAGAGATGGGTCTAATCGTAGTCTACAACTGGGAGTCACATGCCACTACCGACTAATCTGGTCGCCGAACGGGAG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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7 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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8 ^^^^^aaacccc`cccd_ee>UUbebeggadgghhhghhggeggfgggggggggghghgheggggggdfeghgghhhggggggggbegggggggeeeeeeddddeededdaadddeed_dWZddeeedeHY`dddddeeed``d`^`^`b`de^bddedcQ[M^``dbd`dedddW^^`W^b``dP^ddd^`dHWWW`ddddeddee`W`W^`bd`ddd`d^bY^^dcQ[dYbHY^HYW^dc[]WMGW^[
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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9 @MISEQ:1:000000000-A2Y1L:1:1101:17523:2436 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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10 CATCACTACCGCTCAGGAATNTGACGGCAGTCTTAGCGGCGCTCTAGTGCGGGAGGCCGTATCTTGGAATAAGGTGTCGTCAAATGCAAGGCAGGTAACCCTACACGCCGAGGTTACCACTATACTCCCGTTTCTATATTCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATATCGGTTGCCGTCTTCTGCTTGAAAAAAAAAAACAAACAAGAGAAGACGACGTACTGCACCACCA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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11 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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12 ^[K[^aaaaaaaaaaaeeee>U`bdbbdbVWbd\bfgdgVbgbgefg`cfgggbbbggd[cegeeeeceeeeeecececcdddddddddb`ddddZ^adddaddabdZbZSWZG^``bbddd^``^Y^dWW`ddYbd^``ddddY^HHHOYH^^``dddddd`^MWZd>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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13 @MISEQ:1:000000000-A2Y1L:1:1101:15489:2437 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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14 GAGCAGTCGGGCTCAGCGCTNTGCAAATTCTAGTTAGAAACTCACAGTTCTGACAAGCCTTAGGTCAGTGTGATTGGCGGTTAGTCAACTCGGAGAAAGCGTCTTTTCCCGACTTGAATGGTTTGTCCCGACAGTTCGTTGACTGGGGTTTCGTCAGCCTTGAGCGGGGTTCCATCCATCTTTATCGCGCCTTGGGAAAGTAGTCGGCGGGCTTCGGGGTTGGGTGAGGGCAATCCTTGTTCGGTCAAAA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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15 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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16 T\\\\]N[______]_bbbd>UU]`bddddfffffffeeedeceeeee\bcdeeeedcdeeeeeb\`daeL``_bdZdbcT[T[\\b\\cdddGWRbc\\_JS_cddH[cP[GP_ZWWWHXOZHPXWW_GQGESZ\dd>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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17 @MISEQ:1:000000000-A2Y1L:1:1101:18851:2442 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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18 GGTATCCCCCGGCAGTGAGGATGGAGCCATGGTCTGCATCATACTCACCGTAGGTGAGAATATCCACGTCCTTCGACTCCTGGGTGCCGTCTATGGTGCCCTCTGTTACCAGGCAGTGACGGAGGACATGGTGAGGTTTCAGTACCTCTGGCCCGGCCTGGGTCACAGGGTCAGACTGGGTGACCTTCATGAAGCGTCTGGTGACGTAGCTGTGATAGTCCAGCTTGGCAACCTCTGCTGGTTGCAGAGG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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19 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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20 ^^K[^aaaccccccc[eee_ebZeeeadegggbccggfgggcfgggeggd`^dd`ddgcdegggggedbegggegcgddggbegVbdegcdggbeggegge\eeececeeeeddddccdeddd[aabdabdK\\`dPYY``ddbddH^H``dee^^]c^GWGY`W^db^WHHHOHOOYW^HGOHPY^b`bbY``^ZG^dde`ddbdWWHGP`HPOHPYHP^Y`bYY`GHYYHW`bddd^>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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21 @MISEQ:1:000000000-A2Y1L:1:1101:15290:2442 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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22 AAAATAATCCTAAAAAATAACCTCTATGCCGCCGAACGCTCCGCCTCTATCTTCGTAAAAACTATCTTCTCCTCCTCACCTCCATAATCAAGCATCAAGCGATCGCCCTCCGCCAACTCACCCCGCAAAATCTTATCCGCTAGCGGATTCTCAATCTCCGTCTGAATGACCCGCCTCAGCGGCCGCGCCCCATAAACCGAATCAAATCCACGCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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23 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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24 ^^^^^aaaccccccccffffffhhhggeeggggggggggdggdggggghhgggggedghhhgghgghghghhhhhggggggggggggggggcggggggggfdcefffffffZbdfdfbdfffffW]ffffdffddbdffffcWdcff`dfddffbdYbffWbddff^^^bdd[cfWbbH^^]cfMW[`ffffbddfHbQ[fbbdbdHY^bd^bdXbYbYbY^bHPHHOPOYH^dWQEQ[fbd>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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25 @MISEQ:1:000000000-A2Y1L:1:1101:18106:2444 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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26 GTAGTATTCTCATATCACAAGTCCCCAAACTGCATAAGGTGTGGAGTGGAGTGTCTCCCACTGCATTTTGTTGGTTTGGGTTGCATTTTTTGTGGCACAAAATTATCTTTAAACACTCTAAGCTCATATTTGCACATGCAACATGAATTGGAGCATTTCTTTTGCAGTCAACTGCCAGTACATTAACTCCACTCTGTAATAGTAAATCCTGTCTCTTATCCACATCTCCGAGCCCACGAGAATAAGGCGA
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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27 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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28 TTKKT^Xaaaaa[[aaeeeeeeeggeadegegggecebeO`X_]XcXcefZeggggfggeeeeggggdbcbdee]dedddd_bcedeggfggggdgcfggegcegeggggeeggg_ecc^^ceeeecaaddadddddddddddddddddKZ^bdbZbddddba^bddddddddbddd^b^bdHO^HHHNYYY^YHN^Y`YYHHNYHY`bd^OYYY`YYHHHOOYYHN^bWWW^^ddd>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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29 @MISEQ:1:000000000-A2Y1L:1:1101:15892:2446 1:N:0:NAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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30 CTTCCCCACGGCCCAGACACAAGAGACGACCTCCATAAATCTTTTAGAGGGTGACCGCATCTCCGACGCAAACCAGGACGCCGATACCCTCGTGGTGGTGTTCGACCGTACGGATGGCGCAGACACCGACGGCACTAGTGCCACGGTATCAGGTACCACCATAACGTATGATTCGGGCACGCTCAAGGGCCAGCGTGACGGAATCGATAGAATACACTACACGGTGACTGATGGGGCCAGCCAAACCTGT
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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31 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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32 ^^^^^aaacacccccceeeeeeghghgggggghgheffgegggghheghgg^ddfggggggLdfdggbdggggg_eceedeeT_dddeededZ`dbbdZ`ddddd`^W^`dccddceecdQ]]ddee[[[Q]c^cdddHYb^``[]W`debddY^b^ddd^bdeddO^Yd^`bddbcW]dd]GW]dYbddddddcMG^`d^^`^Y`^H^^YbO^bbd^```YWWMWW^YYbYb^HWGS`^`>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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33 @MISEQ:1:000000000-A2Y1L:1:1101:17903:2450 1:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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34 GTGCAGGGGGTGTGGTCAATCCACACTGTTGCTGAGGTGATTGGGTCTCCGGGGTCAACTCCATGAGGTAGCAGACCAGTGCCAGAGATAGTGACCACAGTGTTGGCCCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAGACTTTTAAAAAACCGATCTACACCTTGACAGGCTATTAAAGGAAACTGGCCTGGTATCACAG
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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35 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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36 \T\\\[]JT[T[JT\_bbZWbdddddZLW`becdMVbWVbeL`]d]d\eedHH]]T`dc`ddcLTLT``cb\cJ\ccd[JJRJbbcXcbcJ\_RYcddddcc[_cHXcdXXZ_Z_dd_Z__dddV__W_Y___ZXddESSX^[[dZ\d[[ZWFUZ^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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37 @MISEQ:1:000000000-A2Y1L:1:1101:15113:2451 1:N:0:TAAGGCGATAGATCGC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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38 TCTCAGATGAGCATGCAGCAGCCCAGACTCGCCCCACGCAGTTTGCCAACCACAAGGCCATCCTCGGCCTGTCAGCCTGCCCCTCCCTCCCTCACCAGCTAGCCTCCTATGCCGCGGTAGGGGGCTCAAAGAGATTCAGACACAGCCACGTAATCATGTTACTTGCCCATTCCCCCCTCCCTCCTCCTCCTCTCCCCCCCTCTCTTCCCCTCTCCCCTCCCCTCCTCCCCTCCTGTCCCTTATACACATC
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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39 +
59054f086eca Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
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40 \KK[\]]]_____X__bbdd_ddJJJUbWLJJbdbdJ]cbb]__deeeedddcddTTJ`bdeZLbJ]ddJJba`LLT`JJbcbJS[[J\cd\bcdd_J_XcYcJSZ_>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>