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comparison tool_dependencies.xml @ 4:14d05f2d511d draft

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Version that supports Trimmomatic 0.36.
author pjbriggs
date Thu, 14 Jul 2016 09:17:38 -0400
parents 3358c3d30143
children f80107cdc406
comparison
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3:f8a9a5eaca8a 4:14d05f2d511d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="trimmomatic" version="0.32"> 3 <package name="trimmomatic" version="0.36">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip</action> 6 <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip</action>
7 <action type="move_file"> 7 <action type="move_file">
8 <source>trimmomatic-0.32.jar</source> 8 <source>trimmomatic-0.36.jar</source>
9 <destination>$INSTALL_DIR</destination> 9 <destination>$INSTALL_DIR</destination>
10 </action> 10 </action>
11 <action type="move_directory_files"> 11 <action type="move_directory_files">
12 <source_directory>adapters</source_directory> 12 <source_directory>adapters</source_directory>
13 <destination_directory>$INSTALL_DIR/adapters</destination_directory> 13 <destination_directory>$INSTALL_DIR/adapters</destination_directory>