Mercurial > repos > pjbriggs > trimmomatic

comparison tool_dependencies.xml @ 0:3358c3d30143 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded initial version.
author pjbriggs
date Mon, 01 Dec 2014 10:40:07 -0500
parents
children 14d05f2d511d
comparison
equal deleted inserted replaced
-1:000000000000 0:3358c3d30143
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="trimmomatic" version="0.32">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip</action>
7 <action type="move_file">
8 <source>trimmomatic-0.32.jar</source>
9 <destination>$INSTALL_DIR</destination>
10 </action>
11 <action type="move_directory_files">
12 <source_directory>adapters</source_directory>
13 <destination_directory>$INSTALL_DIR/adapters</destination_directory>
14 </action>
15 <action type="set_environment">
16 <environment_variable name="TRIMMOMATIC_DIR" action="set_to">$INSTALL_DIR</environment_variable>
17 </action>
18 <action type="set_environment">
19 <environment_variable name="TRIMMOMATIC_ADAPTERS_DIR" action="set_to">$INSTALL_DIR/adapters</environment_variable>
20 </action>
21 </actions>
22 </install>
23 <readme>Trimmomatic requires the Java Runtime Environment
24 </readme>
25 </package>
26 </tool_dependency>
27