Mercurial > repos > pjbriggs > trimmomatic

comparison README.rst @ 11:59054f086eca draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Version 0.36.6 (output logs and handle fastqillumina and fastqsolexa inputs)
author pjbriggs
date Fri, 05 Oct 2018 05:19:17 -0400
parents dfa082f84068
children 898b67846b47
comparison
equal deleted inserted replaced
10:dfa082f84068 11:59054f086eca
69 ======= 69 =======
70 70
71 ========== ====================================================================== 71 ========== ======================================================================
72 Version Changes 72 Version Changes
73 ---------- ---------------------------------------------------------------------- 73 ---------- ----------------------------------------------------------------------
74 0.36.6 - Added trimlog and log outputs; add support for ``fastqillumina``
75 and ``fastqsolexa`` input types
74 0.36.5 - Remove tool_dependencies.xml and always use conda to resolve tool 76 0.36.5 - Remove tool_dependencies.xml and always use conda to resolve tool
75 dependencies 77 dependencies
76 0.36.4 - Add option to provide custom adapter sequences for ILLUMINACLIP 78 0.36.4 - Add option to provide custom adapter sequences for ILLUMINACLIP
77 - Add options ``minAdapterLength`` and ``keepBothReads`` for ILLUMINACLIP 79 - Add options ``minAdapterLength`` and ``keepBothReads`` for ILLUMINACLIP
78 in palindrome mode 80 in palindrome mode
108 110
109 Credits 111 Credits
110 ======= 112 =======
111 113
112 This wrapper has been developed and is maintained by Peter Briggs (@pjbriggs). 114 This wrapper has been developed and is maintained by Peter Briggs (@pjbriggs).
113 Peter van Heusden (@pvanheus) and Marius van den Beek (@mvdbeek) contributed 115 Peter van Heusden (@pvanheus) and Marius van den Beek (@mvdbeek) contributed
114 support for gz compressed FastQ files. Charles Girardot (@cgirardot) and 116 support for gz compressed FastQ files. Charles Girardot (@cgirardot) and
115 Jelle Scholtalbers (@scholtalbers) contributed additional options to ILLUMINACLIP. 117 Jelle Scholtalbers (@scholtalbers) contributed additional options to ILLUMINACLIP.
116 118 Matthias Bernt (@bernt-matthias) added log and trimlog output.
117 119
118 Developers 120 Developers
119 ========== 121 ==========
120 122
121 This tool is developed on the following GitHub repository: 123 This tool is developed on the following GitHub repository: