Mercurial > repos > pjbriggs > trimmomatic

comparison trimmomatic.xml @ 13:898b67846b47 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated to Trimmomatic 0.38.
author pjbriggs
date Mon, 08 Jul 2019 07:09:10 -0400
parents 59054f086eca
children d94aff5ee623
comparison
equal deleted inserted replaced
12:51b771646466 13:898b67846b47
1 <tool id="trimmomatic" name="Trimmomatic" version="0.36.6"> 1 <tool id="trimmomatic" name="Trimmomatic" version="0.38.0">
2 <description>flexible read trimming tool for Illumina NGS data</description> 2 <description>flexible read trimming tool for Illumina NGS data</description>
3 <macros> 3 <macros>
4 <import>trimmomatic_macros.xml</import> 4 <import>trimmomatic_macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.36">trimmomatic</requirement> 7 <requirement type="package" version="0.38">trimmomatic</requirement>
8 </requirements> 8 </requirements>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @CONDA_TRIMMOMATIC_JAR_PATH@ && 10 @CONDA_TRIMMOMATIC_JAR_PATH@ &&
11 @CONDA_TRIMMOMATIC_ADAPTERS_PATH@ && 11 @CONDA_TRIMMOMATIC_ADAPTERS_PATH@ &&
12 #if $readtype.single_or_paired == "pair_of_files" 12 #if $readtype.single_or_paired == "pair_of_files"