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Version 0.32.2: use GALAXY_SLOTS to set number of threads.
author pjbriggs
date Wed, 22 Apr 2015 09:36:27 -0400
parents 2bd7cdbb6228
children f8a9a5eaca8a
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1:2bd7cdbb6228 2:a60283899c6d
13 for Illumina Sequence Data. Bioinformatics, btu170. 13 for Illumina Sequence Data. Bioinformatics, btu170.
14 14
15 Automated installation 15 Automated installation
16 ====================== 16 ======================
17 17
18 Installation via the Galaxy Tool Shed will take of installing the tool wrapper and 18 Installation via the Galaxy Tool Shed will take care of installing the tool wrapper
19 the trimmomatic program and data, and setting the appropriate environment variables. 19 and the trimmomatic program and data, and setting the appropriate environment
20 variables.
20 21
21 Manual Installation 22 Manual Installation
22 =================== 23 ===================
23 24
24 There are two files to install: 25 There are two files to install:
55 ======= 56 =======
56 57
57 ========== ====================================================================== 58 ========== ======================================================================
58 Version Changes 59 Version Changes
59 ---------- ---------------------------------------------------------------------- 60 ---------- ----------------------------------------------------------------------
61 0.32.2 - Use ``GALAXY_SLOTS`` to set the appropriate number of threads to use
62 at runtime (default is 6).
60 0.32.1 - Remove ``trimmomatic_adapters.loc.sample`` and hard-code adapter files 63 0.32.1 - Remove ``trimmomatic_adapters.loc.sample`` and hard-code adapter files
61 into the XML wrapper. 64 into the XML wrapper.
62 0.32.0 - Add tool_dependencies.xml to install Trimmomatic 0.32 automatically and 65 0.32.0 - Add tool_dependencies.xml to install Trimmomatic 0.32 automatically and
63 set the environment. 66 set the environment.
64 - Update tool versioning to use Trimmomatic version number (i.e. ``0.32``) 67 - Update tool versioning to use Trimmomatic version number (i.e. ``0.32``)