Mercurial > repos > pjbriggs > trimmomatic

diff trimmomatic.xml @ 1:2bd7cdbb6228 draft

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Add README and citation tags.
author pjbriggs
date Tue, 09 Dec 2014 09:41:33 -0500
parents 3358c3d30143
children a60283899c6d
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--- a/trimmomatic.xml	Mon Dec 01 10:40:07 2014 -0500
+++ b/trimmomatic.xml	Tue Dec 09 09:41:33 2014 -0500
@@ -223,11 +223,18 @@
 
 The reference for Trimmomatic is:
 
- * Lohse M, Bolger AM, Nagel A, Fernie AR, Lunn JE, Stitt M, Usadel B. RobiNA: a
-   user-friendly, integrated software solution for RNA-Seq-based transcriptomics.
-   Nucleic Acids Res. 2012 Jul;40(Web Server issue):W622-7)
+ * Bolger, A.M., Lohse, M., & Usadel, B. (2014). Trimmomatic: A flexible trimmer
+   for Illumina Sequence Data. Bioinformatics, btu170.
 
 Please kindly acknowledge both this Galaxy tool and the Trimmomatic program if you
 use it.
   </help>
+  <citations>
+    <!--
+    See https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Ccitations.3E_tag_set
+    Can be either DOI or Bibtex
+    Use http://www.bioinformatics.org/texmed/ to convert PubMed to Bibtex
+    -->
+    <citation type="doi">10.1093/bioinformatics/btu170</citation>
+  </citations>
 </tool>