Mercurial > repos > pjbriggs > trimmomatic

diff trimmomatic_macros.xml @ 15:32f1f56bd970 draft

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Updated for Trimmomatic 0.39 and adds quality score options.
author pjbriggs
date Thu, 02 Mar 2023 15:24:24 +0000
parents d94aff5ee623
children 9a38087e3bfd
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--- a/trimmomatic_macros.xml	Thu Mar 26 04:52:47 2020 -0400
+++ b/trimmomatic_macros.xml	Thu Mar 02 15:24:24 2023 +0000
@@ -5,4 +5,6 @@
   -->
   <token name="@CONDA_TRIMMOMATIC_JAR_PATH@">if [ -z "\$TRIMMOMATIC_JAR_PATH" ]; then export TRIMMOMATIC_JAR_PATH=\$(dirname \$(readlink -e \$(which trimmomatic))); fi</token>
   <token name="@CONDA_TRIMMOMATIC_ADAPTERS_PATH@">if [ -z "\$TRIMMOMATIC_ADAPTERS_PATH" ]; then export TRIMMOMATIC_ADAPTERS_PATH=\$(dirname \$(readlink -e \$(which trimmomatic)))/adapters; fi</token>
+  <token name="@TOOL_VERSION@">0.39</token>
+  <token name="@VERSION_SUFFIX@">0</token>
 </macros>