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Updated to version 0.32.3: add support for FASTQ pairs (dataset collections)
author pjbriggs
date Wed, 23 Sep 2015 08:59:23 -0400
parents 3358c3d30143
children 14d05f2d511d
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<?xml version="1.0"?>
<tool_dependency>
    <package name="trimmomatic" version="0.32">
      <install version="1.0">
	<actions>
	  <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip</action>
	  <action type="move_file">
	    <source>trimmomatic-0.32.jar</source>
	    <destination>$INSTALL_DIR</destination>
	  </action>
          <action type="move_directory_files">
            <source_directory>adapters</source_directory>
            <destination_directory>$INSTALL_DIR/adapters</destination_directory>
          </action>
	  <action type="set_environment">
	    <environment_variable name="TRIMMOMATIC_DIR" action="set_to">$INSTALL_DIR</environment_variable>
	  </action>
	  <action type="set_environment">
	    <environment_variable name="TRIMMOMATIC_ADAPTERS_DIR" action="set_to">$INSTALL_DIR/adapters</environment_variable>
	  </action>
	</actions>
      </install>
      <readme>Trimmomatic requires the Java Runtime Environment
      </readme>
    </package>
</tool_dependency>