Mercurial > repos > pjbriggs > weeder2
comparison test-data/weeder_in.fa.w2 @ 4:89315bdc1a8c draft default tip
Uploaded tool version 2.0.3.
author | pjbriggs |
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date | Wed, 26 Sep 2018 10:12:56 -0400 |
parents | |
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comparison
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3:f19e18ab01b1 | 4:89315bdc1a8c |
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1 COMMAND LINE: | |
2 | |
3 ./weeder2 -f /home/pjb/projects/galaxy-tools/tools/weeder2/test-data/weeder_in.fa -O MM | |
4 | |
5 MOTIFS SUMMARY: | |
6 | |
7 1) GTTTCAATTA (TAATTGAAAC) 2.38 | |
8 2) CATTTTAA (TTAAAATG) 2.082 | |
9 3) GTGAATTA (TAATTCAC) 1.969 | |
10 4) TCAATCAT (ATGATTGA) 1.944 | |
11 5) TGTTTAAT (ATTAAACA) 1.874 | |
12 6) ATTACT (AGTAAT) 1.823 | |
13 7) TCACAT (ATGTGA) 1.8 | |
14 8) TACATT (AATGTA) 1.773 | |
15 9) TTGACA (TGTCAA) 1.733 | |
16 10) AATAAT (ATTATT) 1.714 | |
17 11) ATGACT (AGTCAT) 1.702 | |
18 12) TTGAAA (TTTCAA) 1.693 | |
19 13) ATTTTA (TAAAAT) 1.691 | |
20 14) TAAACA (TGTTTA) 1.685 | |
21 15) ATGATT (AATCAT) 1.678 | |
22 16) AGTATT (AATACT) 1.664 | |
23 17) TTGAGT (ACTCAA) 1.574 | |
24 18) TAAAAC (GTTTTA) 1.572 | |
25 19) GTGAAT (ATTCAC) 1.568 | |
26 20) AATACA (TGTATT) 1.564 | |
27 | |
28 | |
29 DETAILED RESULTS: | |
30 | |
31 1) GTTTCAATTA (TAATTGAAAC) 2.38 | |
32 | |
33 Matrix: MAT1 GTTTCAATTA | |
34 A 0.1739 0.08497 0.1198 0.1538 0.186 0.8184 0.6871 0.09156 0.1002 0.7403 | |
35 C 0.06162 0.05256 0.05743 0.07398 0.5592 0.08087 0.0987 0.08757 0.149 0.08036 | |
36 G 0.591 0.06033 0.07754 0.07127 0.1033 0.0563 0.08422 0.04673 0.08862 0.06081 | |
37 T 0.1735 0.8021 0.7452 0.701 0.1515 0.04446 0.1299 0.7741 0.6622 0.1185 | |
38 | |
39 OCCURRENCES: | |
40 >chr1:8797248-879744 35 GTTTCAATTA 1 174 + | |
41 >chr1:3467418-346761 1 TTTTCAATTA 0.934855 187 - | |
42 >chr1:5072821-507302 8 GTTTGAATTA 0.928879 153 - | |
43 >chr1:9932599-993279 45 GTTTCAATCA 0.919923 124 + | |
44 >chr1:9013525-901372 37 GTTTCACTTA 0.908195 51 + | |
45 >chr1:9956513-995671 48 GTTTCCATTA 0.88494 114 - | |
46 >chr1:9813405-981360 44 TTTTAAATTA 0.876639 141 + | |
47 >chr1:7768736-776893 34 ATTTTAATTA 0.871314 131 - | |
48 >chr1:9956513-995671 48 ATTTCAATCA 0.854845 177 - | |
49 >chr1:7444756-744495 33 GTTTAAATGA 0.852292 99 + | |
50 >chr1:7386917-738711 29 TTTACAATTA 0.849485 45 + | |
51 >chr1:7303541-730374 27 GTTTTAATGA 0.8469 8 - | |
52 >chr1:5805347-580554 10 GTTCAAATTA 0.843965 178 - | |
53 >chr1:7768736-776893 34 GTATTAATTA 0.83883 127 + | |
54 >chr1:6588721-658892 21 GTTGTAATTA 0.83815 138 + | |
55 >chr1:7388025-738822 30 CTTTCAATCA 0.83733 1 + | |
56 >chr1:9962925-996312 49 GTCTAAATTA 0.834485 190 - | |
57 >chr1:4562216-456241 4 ATTTCAACTA 0.827808 147 + | |
58 >chr1:6878570-687877 25 GTTTTGATTA 0.817499 91 - | |
59 >chr1:6396504-639670 18 GTTTCATTTT 0.816051 171 + | |
60 >chr1:7768736-776893 34 GTTTCATCTA 0.805952 147 + | |
61 >chr1:9460371-946057 38 GTATCAATTT 0.805422 84 + | |
62 >chr1:6721868-672206 23 GTTTCAGATA 0.799444 28 - | |
63 >chr1:6090845-609104 11 TTTTTAATCA 0.79117 168 - | |
64 >chr1:9948240-994844 47 GTTTCAACTC 0.789921 109 - | |
65 >chr1:6266967-626716 15 GCTCCAATTA 0.785236 145 - | |
66 >chr1:5072821-507302 8 GTTTAATTCA 0.774774 150 + | |
67 >chr1:6090845-609104 11 ATTGTAATTA 0.773071 87 + | |
68 >chr1:8851545-885174 36 TTTTGACTTA 0.771928 49 - | |
69 >chr1:6878570-687877 25 ATTACAATCA 0.769475 34 - | |
70 >chr1:6090845-609104 11 GTTAAAATGA 0.766922 148 - | |
71 >chr1:4662531-466273 5 GTTTTACTCA 0.764511 34 - | |
72 >chr1:4562216-456241 4 GTTGAAATCA 0.763465 145 - | |
73 >chr1:6090845-609104 11 ATTACAATAA 0.761859 85 - | |
74 >chr1:9013525-901372 37 GTTTAAGTAA 0.760027 162 + | |
75 >chr1:6205539-620573 13 GTTAAAATTT 0.7594 156 + | |
76 >chr1:7413722-741392 32 TTTTCATTGA 0.758428 125 - | |
77 >chr1:9932599-993279 45 GTTTGATTAA 0.754251 45 - | |
78 >chr1:6588721-658892 21 TTATCAATAA 0.749598 145 + | |
79 >chr1:6205539-620573 13 GTATAAATTT 0.747207 160 - | |
80 >chr1:4774948-477514 6 TTTACAATTC 0.74652 118 - | |
81 >chr1:4833767-483396 7 GGTTAAATCA 0.745976 183 + | |
82 >chr1:6588721-658892 21 ATTACAACTA 0.742438 136 - | |
83 >chr1:9948240-994844 47 GTTGAAACTA 0.736427 111 + | |
84 >chr1:4833767-483396 7 ATTACAAGTA 0.736066 103 - | |
85 >chr1:9574131-957433 42 ATTACCATTA 0.734492 157 - | |
86 >chr1:6721868-672206 23 AATTCAGTTA 0.728969 72 + | |
87 >chr1:4774948-477514 6 GATCTAATTA 0.726685 11 - | |
88 >chr1:6266967-626716 15 ATTTCAACTC 0.724842 175 + | |
89 >chr1:4833767-483396 7 GTAACGATTA 0.698174 62 - | |
90 ********** | |
91 | |
92 2) CATTTTAA (TTAAAATG) 2.082 | |
93 | |
94 Matrix: MAT2 CATTTTAA | |
95 A 0.216 0.8128 0.1075 0.04678 0.1112 0.1399 0.7346 0.7969 | |
96 C 0.5444 0.04193 0.0509 0.03932 0.0429 0.08711 0.1099 0.09147 | |
97 G 0.1067 0.03289 0.07156 0.0785 0.0966 0.09202 0.05706 0.0382 | |
98 T 0.1328 0.1124 0.77 0.8354 0.7493 0.681 0.09836 0.0734 | |
99 | |
100 OCCURRENCES: | |
101 >chr1:9813405-981360 44 CATTTTAA 1 131 - | |
102 >chr1:7768736-776893 34 CATTTTAA 1 134 - | |
103 >chr1:7388801-738900 31 CATTTTAA 1 62 + | |
104 >chr1:6205539-620573 13 CATTTTAA 1 28 - | |
105 >chr1:6090845-609104 11 CATTTTAA 1 149 + | |
106 >chr1:3467418-346761 1 CATTTTAA 1 182 + | |
107 >chr1:9942670-994287 46 AATTTTAA 0.939956 134 - | |
108 >chr1:9013525-901372 37 AATTTTAA 0.939956 112 - | |
109 >chr1:6205539-620573 13 AATTTTAA 0.939956 157 - | |
110 >chr1:8851545-885174 36 TATTTTAA 0.924741 103 - | |
111 >chr1:6262414-626261 14 TATTTTAA 0.924741 183 + | |
112 >chr1:7386917-738711 29 GATTTTAA 0.919973 30 - | |
113 >chr1:6266967-626716 15 GATTTTAA 0.919973 2 - | |
114 >chr1:5072821-507302 8 GATTTTAA 0.919973 114 - | |
115 >chr1:7444756-744495 33 CATTTAAA 0.901069 100 - | |
116 >chr1:9932599-993279 45 CATTTGAA 0.892317 175 - | |
117 >chr1:6266967-626716 15 CATTTCAA 0.891418 174 + | |
118 >chr1:6750817-675101 24 CATTTTCA 0.885779 154 - | |
119 >chr1:6090845-609104 11 CATTTTCA 0.885779 5 + | |
120 >chr1:5168670-516887 9 CATTTTCA 0.885779 26 - | |
121 >chr1:6360131-636033 17 CATTTTTA 0.883664 135 + | |
122 >chr1:9948240-994844 47 CATTATAA 0.883344 56 - | |
123 >chr1:5805347-580554 10 CATTGTAA 0.880668 126 - | |
124 >chr1:9948240-994844 47 CAATTTAA 0.878877 16 + | |
125 >chr1:9942670-994287 46 CAATTTAA 0.878877 130 + | |
126 >chr1:6090845-609104 11 CAATTTAA 0.878877 122 + | |
127 >chr1:6396504-639670 18 CATTTTGA 0.876113 175 + | |
128 >chr1:9013525-901372 37 CAGTTTAA 0.872299 108 + | |
129 >chr1:6266967-626716 15 CTTTTTAA 0.871938 44 - | |
130 >chr1:6262414-626261 14 CTTTTTAA 0.871938 187 - | |
131 >chr1:6090845-609104 11 CTTTTTAA 0.871938 171 - | |
132 >chr1:4774948-477514 6 CATTCTAA 0.870849 60 + | |
133 >chr1:6090845-609104 11 CACTTTAA 0.868521 126 - | |
134 >chr1:8797248-879744 35 CATTTTAT 0.867711 146 - | |
135 >chr1:4024990-402519 2 CATTTTAG 0.861275 117 - | |
136 >chr1:8851545-885174 36 AATTTGAA 0.832272 183 - | |
137 >chr1:5805347-580554 10 AATTTGAA 0.832272 179 + | |
138 >chr1:9956513-995671 48 AATTTCAA 0.831373 180 - | |
139 >chr1:6588721-658892 21 AATTTCAA 0.831373 101 - | |
140 >chr1:3467418-346761 1 AATTTTCA 0.825735 191 - | |
141 >chr1:7386917-738711 29 AATTGTAA 0.820624 46 - | |
142 >chr1:4774948-477514 6 AATTGTAA 0.820624 119 + | |
143 >chr1:9956513-995671 48 AATTTTAC 0.810972 184 + | |
144 >chr1:7413722-741392 32 AATTTTAC 0.810972 10 + | |
145 >chr1:6472202-647240 20 AATTTTAC 0.810972 32 + | |
146 >chr1:6090845-609104 11 TATTGTAA 0.805409 86 + | |
147 >chr1:9554705-955490 40 AATGTTAA 0.801568 46 + | |
148 >chr1:8851545-885174 36 AATGTTAA 0.801568 99 + | |
149 >chr1:6878570-687877 25 GATTGTAA 0.800641 35 + | |
150 >chr1:7444756-744495 33 CATTATAC 0.75436 70 - | |
151 ********** | |
152 | |
153 3) GTGAATTA (TAATTCAC) 1.969 | |
154 | |
155 Matrix: MAT3 GTGAATTA | |
156 A 0.2434 0.0588 0.09038 0.7708 0.7064 0.0692 0.08129 0.7448 | |
157 C 0.08343 0.02873 0.1008 0.06039 0.0821 0.07782 0.09324 0.09242 | |
158 G 0.5181 0.06202 0.6983 0.08538 0.05523 0.08203 0.1107 0.09517 | |
159 T 0.1551 0.8504 0.1106 0.08347 0.1562 0.7709 0.7148 0.0676 | |
160 | |
161 OCCURRENCES: | |
162 >chr1:6266967-626716 15 GTGAATTA 1 15 + | |
163 >chr1:8851545-885174 36 ATGAATTA 0.94756 84 - | |
164 >chr1:6437830-643803 19 ATGAATTA 0.94756 128 - | |
165 >chr1:5072821-507302 8 TTGAATTA 0.930703 153 - | |
166 >chr1:6878570-687877 25 CTGAATTA 0.917022 85 + | |
167 >chr1:6721868-672206 23 CTGAATTA 0.917022 71 - | |
168 >chr1:9568576-956877 41 GTGATTTA 0.89497 22 + | |
169 >chr1:4833767-483396 7 GTGATTTA 0.89497 186 - | |
170 >chr1:6262414-626261 14 GTGAATGA 0.884673 174 + | |
171 >chr1:4402453-440265 3 GTGAATCA 0.881343 131 - | |
172 >chr1:6437830-643803 19 GTGAATAA 0.879062 123 + | |
173 >chr1:9956513-995671 48 GTGAATTG 0.875981 77 - | |
174 >chr1:6878570-687877 25 GTGAATTG 0.875981 53 + | |
175 >chr1:6277750-627795 16 GTGAATTC 0.875456 27 - | |
176 >chr1:7768736-776893 34 GTGGATTA 0.86916 11 + | |
177 >chr1:6721868-672206 23 GTGGATTA 0.86916 168 + | |
178 >chr1:3467418-346761 1 GTGTATTA 0.868795 4 - | |
179 >chr1:7209035-720923 26 GTGAAGTA 0.868484 12 - | |
180 >chr1:6183701-618390 12 GTGAACTA 0.867682 60 + | |
181 >chr1:4024990-402519 2 GTGAACTA 0.867682 97 - | |
182 >chr1:6396504-639670 18 GGGAATTA 0.849489 51 + | |
183 >chr1:7768736-776893 34 ATTAATTA 0.835366 129 + | |
184 >chr1:9978791-997899 50 ATAAATTA 0.831511 27 + | |
185 >chr1:7768736-776893 34 ATAAATTA 0.831511 104 + | |
186 >chr1:6183701-618390 12 ATGAATCA 0.828904 71 + | |
187 >chr1:5072821-507302 8 ATGAATCA 0.828904 85 - | |
188 >chr1:9932599-993279 45 ATGACTTA 0.828376 12 - | |
189 >chr1:9574131-957433 42 ATGACTTA 0.828376 55 + | |
190 >chr1:5072821-507302 8 ATGAATAA 0.826623 21 + | |
191 >chr1:9574131-957433 42 TTGATTTA 0.825673 145 - | |
192 >chr1:8797248-879744 35 TTGATTTA 0.825673 7 + | |
193 >chr1:8797248-879744 35 TTCAATTA 0.816637 176 + | |
194 >chr1:3467418-346761 1 TTCAATTA 0.816637 187 - | |
195 >chr1:7768736-776893 34 ATGTATTA 0.816356 125 + | |
196 >chr1:5072821-507302 8 ATGTATTA 0.816356 42 + | |
197 >chr1:3467418-346761 1 ATGTATTA 0.816356 26 - | |
198 >chr1:9568576-956877 41 ATGAAGTA 0.816044 150 + | |
199 >chr1:6721868-672206 23 TTGAATGA 0.815376 85 + | |
200 >chr1:7209035-720923 26 ATGAACTA 0.815242 42 + | |
201 >chr1:6878570-687877 25 ATGCATTA 0.81195 43 - | |
202 >chr1:8851545-885174 36 TTGACTTA 0.811518 49 - | |
203 >chr1:9942670-994287 46 TTGAATTG 0.806684 162 + | |
204 >chr1:6090845-609104 11 TTGCATTA 0.795092 39 + | |
205 >chr1:6719561-671976 22 ACGAATTA 0.790695 71 - | |
206 >chr1:9942670-994287 46 GTCATTTA 0.780905 11 - | |
207 >chr1:6472202-647240 20 GTCATTTA 0.780905 144 + | |
208 >chr1:9956513-995671 48 GTGATTGA 0.779643 176 + | |
209 >chr1:9932599-993279 45 GTGATTGA 0.779643 127 - | |
210 >chr1:4774948-477514 6 GTGATCTA 0.762652 15 - | |
211 >chr1:6205539-620573 13 GTCTATTA 0.75473 143 + | |
212 ********** | |
213 | |
214 4) TCAATCAT (ATGATTGA) 1.944 | |
215 | |
216 Matrix: MAT4 TCAATCAT | |
217 A 0.05132 0.186 0.8183 0.6756 0.1425 0.08545 0.8726 0.1838 | |
218 C 0.02852 0.5378 0.07891 0.05957 0.02786 0.6724 0.03639 0.1337 | |
219 G 0.0695 0.1008 0.02175 0.09712 0.07326 0.07966 0.0383 0.06208 | |
220 T 0.8507 0.1753 0.08099 0.1677 0.7564 0.1625 0.05268 0.6204 | |
221 | |
222 OCCURRENCES: | |
223 >chr1:8851545-885174 36 TCAATCAT 1 120 + | |
224 >chr1:7444756-744495 33 TCAATCAT 1 11 + | |
225 >chr1:9013525-901372 37 TTAATCAT 0.932721 174 + | |
226 >chr1:6090845-609104 11 TTAATCAT 0.932721 167 - | |
227 >chr1:4774948-477514 6 TTAATCAT 0.932721 139 - | |
228 >chr1:4833767-483396 7 TCAATCAA 0.918952 128 - | |
229 >chr1:5072821-507302 8 TGAATCAT 0.918887 84 - | |
230 >chr1:9956513-995671 48 TCAATCAC 0.909665 176 - | |
231 >chr1:9932599-993279 45 TCAATCAC 0.909665 127 + | |
232 >chr1:9574131-957433 42 TCATTCAT 0.90572 83 - | |
233 >chr1:7303541-730374 27 TCATTCAT 0.90572 107 - | |
234 >chr1:8797248-879744 35 TCAATTAT 0.905366 177 + | |
235 >chr1:7388025-738822 30 TCAATCAG 0.896366 4 + | |
236 >chr1:7444756-744495 33 TCAAACAT 0.886061 130 - | |
237 >chr1:6472202-647240 20 TCACTCAT 0.885652 20 - | |
238 >chr1:8797248-879744 35 TCTATCAT 0.863139 56 + | |
239 >chr1:6277750-627795 16 TCTATCAT 0.863139 95 + | |
240 >chr1:9574131-957433 42 TCCATCAT 0.862751 116 + | |
241 >chr1:6266967-626716 15 TCCATCAT 0.862751 112 - | |
242 >chr1:9574131-957433 42 TAAATCAA 0.853657 145 + | |
243 >chr1:8797248-879744 35 TAAATCAA 0.853657 7 - | |
244 >chr1:9932599-993279 45 TTAATCAA 0.851673 45 + | |
245 >chr1:6878570-687877 25 TTAATCAA 0.851673 90 + | |
246 >chr1:7386917-738711 29 TCAATCCT 0.844783 2 + | |
247 >chr1:9568576-956877 41 TAAATCAC 0.84437 22 - | |
248 >chr1:4833767-483396 7 TAAATCAC 0.84437 186 + | |
249 >chr1:8851545-885174 36 TAATTCAT 0.840425 84 + | |
250 >chr1:6437830-643803 19 TAATTCAT 0.840425 128 + | |
251 >chr1:9962925-996312 49 TAAATTAT 0.84007 189 - | |
252 >chr1:7768736-776893 34 TAAATTAT 0.84007 105 + | |
253 >chr1:7303541-730374 27 TTATTCAT 0.838441 169 + | |
254 >chr1:5072821-507302 8 TTATTCAT 0.838441 21 - | |
255 >chr1:4402453-440265 3 TGAATCAA 0.837839 130 - | |
256 >chr1:9932599-993279 45 TAAGTCAT 0.827328 12 + | |
257 >chr1:9574131-957433 42 TAAGTCAT 0.827328 55 - | |
258 >chr1:6721868-672206 23 TCATTCAA 0.824672 85 - | |
259 >chr1:6183701-618390 12 TGATTCAT 0.824607 71 - | |
260 >chr1:5072821-507302 8 TGATTCAT 0.824607 85 + | |
261 >chr1:3467418-346761 1 TCAATTAA 0.824318 186 - | |
262 >chr1:6437830-643803 19 TGAATTAT 0.824253 127 - | |
263 >chr1:6266967-626716 15 TGAATTAT 0.824253 16 + | |
264 >chr1:4024990-402519 2 TAAAACAT 0.820765 82 + | |
265 >chr1:9942670-994287 46 TTAAACAT 0.818782 80 + | |
266 >chr1:6360131-636033 17 TTAAACAT 0.818782 143 + | |
267 >chr1:5072821-507302 8 TTAAACAT 0.818782 148 - | |
268 >chr1:6588721-658892 21 TCAATAAC 0.800726 148 + | |
269 >chr1:6262414-626261 14 TCAGTTAT 0.797989 137 + | |
270 >chr1:6205539-620573 13 TCTATCAA 0.782091 96 - | |
271 >chr1:4662531-466273 5 TAAATCGT 0.779842 56 + | |
272 >chr1:4833767-483396 7 TTAATCGT 0.777858 61 + | |
273 ********** | |
274 | |
275 5) TGTTTAAT (ATTAAACA) 1.874 | |
276 | |
277 Matrix: MAT5 TGTTTAAT | |
278 A 0.1111 0.09112 0.1881 0.1074 0.1057 0.6769 0.7668 0.1993 | |
279 C 0.02537 0.03582 0.06521 0.08013 0.08927 0.09377 0.03432 0.08804 | |
280 G 0.07262 0.7214 0.06612 0.05896 0.07036 0.1072 0.116 0.09061 | |
281 T 0.7909 0.1516 0.6806 0.7536 0.7347 0.1221 0.08288 0.6221 | |
282 | |
283 OCCURRENCES: | |
284 >chr1:6360131-636033 17 TGTTTAAT 1 142 - | |
285 >chr1:5072821-507302 8 TGTTTAAT 1 149 + | |
286 >chr1:9942670-994287 46 TGTTTAAA 0.919846 79 - | |
287 >chr1:6878570-687877 25 TGATTAAT 0.906643 89 - | |
288 >chr1:4774948-477514 6 TGATTAAT 0.906643 140 + | |
289 >chr1:9013525-901372 37 TGTTTAAG 0.899248 161 + | |
290 >chr1:6360131-636033 17 TGTTTAAG 0.899248 6 + | |
291 >chr1:5805347-580554 10 TGTTTAAC 0.898761 16 - | |
292 >chr1:9978791-997899 50 TGTTTGAT 0.892015 68 + | |
293 >chr1:6396504-639670 18 TGTTTGAT 0.892015 10 - | |
294 >chr1:4562216-456241 4 TGTTTGAT 0.892015 141 + | |
295 >chr1:6396504-639670 18 TTTTTAAT 0.891988 59 + | |
296 >chr1:6090845-609104 11 TTTTTAAT 0.891988 170 - | |
297 >chr1:9460371-946057 38 TGTTTCAT 0.889461 121 - | |
298 >chr1:9568576-956877 41 TGTTCAAT 0.877642 144 + | |
299 >chr1:7388801-738900 31 TGTTTAGT 0.876624 88 - | |
300 >chr1:6719561-671976 22 TGTCTAAT 0.872337 67 + | |
301 >chr1:6090845-609104 11 TGATTAAA 0.826489 168 + | |
302 >chr1:7444756-744495 33 TGTTTGAA 0.811861 131 + | |
303 >chr1:5072821-507302 8 TGTTTGAA 0.811861 156 - | |
304 >chr1:9932599-993279 45 TGTTTCAA 0.809307 123 + | |
305 >chr1:8797248-879744 35 TGTTTCAA 0.809307 173 + | |
306 >chr1:6396504-639670 18 TGTTTCAA 0.809307 179 - | |
307 >chr1:9932599-993279 45 TGATTAAC 0.805404 44 - | |
308 >chr1:9013525-901372 37 TGATTAAC 0.805404 173 - | |
309 >chr1:9574131-957433 42 TGATTTAT 0.801481 144 - | |
310 >chr1:9568576-956877 41 TGATTTAT 0.801481 23 + | |
311 >chr1:8797248-879744 35 TGATTTAT 0.801481 8 + | |
312 >chr1:8851545-885174 36 TGATTGAT 0.798658 119 - | |
313 >chr1:4833767-483396 7 TGATTGAT 0.798658 129 + | |
314 >chr1:9948240-994844 47 TGTATAAA 0.797343 126 + | |
315 >chr1:6205539-620573 13 TGTATAAA 0.797343 163 - | |
316 >chr1:9932599-993279 45 TGTTTAGA 0.79647 148 + | |
317 >chr1:4562216-456241 4 TGTTTAGA 0.79647 165 - | |
318 >chr1:6183701-618390 12 TGATTCAT 0.796104 71 - | |
319 >chr1:5072821-507302 8 TGATTCAT 0.796104 85 + | |
320 >chr1:9948240-994844 47 TGTTTATA 0.790191 128 - | |
321 >chr1:9978791-997899 50 TGATAAAT 0.787394 72 + | |
322 >chr1:6437830-643803 19 TGAATAAT 0.78414 124 + | |
323 >chr1:4024990-402519 2 TGATTATT 0.776988 186 + | |
324 >chr1:6183701-618390 12 TGTATAAC 0.776258 8 - | |
325 >chr1:6878570-687877 25 TGTTCTAT 0.77248 74 + | |
326 >chr1:3467418-346761 1 TGTATTAT 0.772335 25 - | |
327 >chr1:3467418-346761 1 TGTATTAT 0.772335 3 - | |
328 >chr1:7413722-741392 32 AGTTTAAC 0.769901 187 + | |
329 >chr1:9574131-957433 42 TGTATGAT 0.769512 119 - | |
330 >chr1:9568576-956877 41 TGTATAGT 0.754121 107 + | |
331 >chr1:7444756-744495 33 AGTATAAT 0.748637 69 + | |
332 >chr1:6090845-609104 11 AGTATAAT 0.748637 93 - | |
333 >chr1:6721868-672206 23 GGTATAAT 0.741335 124 - | |
334 ********** | |
335 | |
336 6) ATTACT (AGTAAT) 1.823 | |
337 | |
338 Matrix: MAT6 ATTACT | |
339 A 0.8781 0.0835 0.07038 0.7901 0.03473 0.1075 | |
340 C 0.04152 0.05455 0.05837 0.03709 0.7755 0.04605 | |
341 G 0.0322 0.01277 0.1088 0.07223 0.04238 0.01572 | |
342 T 0.04814 0.8492 0.7624 0.1005 0.1473 0.8308 | |
343 | |
344 OCCURRENCES: | |
345 >chr1:9978791-997899 50 ATTACT 1 31 + | |
346 >chr1:9568576-956877 41 ATTACT 1 154 - | |
347 >chr1:9013525-901372 37 ATTACT 1 183 - | |
348 >chr1:7209035-720923 26 ATTACT 1 183 + | |
349 >chr1:6878570-687877 25 ATTACT 1 64 - | |
350 >chr1:6719561-671976 22 ATTACT 1 137 + | |
351 >chr1:6588721-658892 21 ATTACT 1 9 - | |
352 >chr1:6472202-647240 20 ATTACT 1 176 - | |
353 >chr1:6472202-647240 20 ATTACT 1 29 - | |
354 >chr1:6360131-636033 17 ATTACT 1 86 + | |
355 >chr1:6262414-626261 14 ATTACT 1 160 + | |
356 >chr1:6090845-609104 11 ATTACT 1 20 - | |
357 >chr1:5805347-580554 10 ATTACT 1 176 - | |
358 >chr1:5072821-507302 8 ATTACT 1 46 + | |
359 >chr1:4774948-477514 6 ATTACT 1 194 - | |
360 >chr1:3467418-346761 1 ATTACT 1 32 + | |
361 >chr1:9962925-996312 49 ATTATT 0.866209 188 - | |
362 >chr1:9962925-996312 49 ATTATT 0.866209 133 + | |
363 >chr1:9942670-994287 46 ATTATT 0.866209 73 + | |
364 >chr1:8797248-879744 35 ATTATT 0.866209 192 + | |
365 >chr1:6878570-687877 25 ATTATT 0.866209 41 - | |
366 >chr1:6719561-671976 22 ATTATT 0.866209 181 - | |
367 >chr1:6719561-671976 22 ATTATT 0.866209 145 - | |
368 >chr1:6472202-647240 20 ATTATT 0.866209 5 + | |
369 >chr1:6437830-643803 19 ATTATT 0.866209 126 - | |
370 >chr1:6396504-639670 18 ATTATT 0.866209 55 + | |
371 >chr1:6090845-609104 11 ATTATT 0.866209 84 + | |
372 >chr1:6090845-609104 11 ATTATT 0.866209 43 + | |
373 >chr1:5805347-580554 10 ATTATT 0.866209 65 - | |
374 >chr1:4024990-402519 2 ATTATT 0.866209 188 + | |
375 >chr1:3467418-346761 1 ATTATT 0.866209 24 - | |
376 >chr1:9942670-994287 46 ATGACT 0.860789 34 + | |
377 >chr1:9932599-993279 45 ATGACT 0.860789 14 - | |
378 >chr1:9574131-957433 42 ATGACT 0.860789 55 + | |
379 >chr1:9013525-901372 37 ATGACT 0.860789 193 + | |
380 >chr1:7768736-776893 34 ATGACT 0.860789 121 - | |
381 >chr1:7444756-744495 33 ATGACT 0.860789 194 - | |
382 >chr1:7444756-744495 33 ATGACT 0.860789 40 - | |
383 >chr1:7303541-730374 27 ATGACT 0.860789 111 + | |
384 >chr1:6472202-647240 20 ATGACT 0.860789 143 - | |
385 >chr1:6183701-618390 12 ATGACT 0.860789 175 - | |
386 >chr1:4662531-466273 5 ATGACT 0.860789 126 + | |
387 >chr1:6878570-687877 25 ATTACA 0.845949 38 - | |
388 >chr1:6719561-671976 22 ATTACA 0.845949 127 + | |
389 >chr1:6588721-658892 21 ATTACA 0.845949 140 - | |
390 >chr1:6090845-609104 11 ATTACA 0.845949 89 - | |
391 >chr1:5805347-580554 10 ATTACA 0.845949 147 + | |
392 >chr1:5805347-580554 10 ATTACA 0.845949 125 + | |
393 >chr1:4833767-483396 7 ATTACA 0.845949 107 - | |
394 >chr1:4774948-477514 6 ATTACA 0.845949 9 - | |
395 ********** | |
396 | |
397 7) TCACAT (ATGTGA) 1.8 | |
398 | |
399 Matrix: MAT7 TCACAT | |
400 A 0.08233 0.1013 0.9032 0.139 0.8283 0.0876 | |
401 C 0.04274 0.7009 0.02867 0.7396 0.0355 0.04803 | |
402 G 0.04677 0.1109 0.01307 0.0554 0.0163 0.05845 | |
403 T 0.8282 0.08693 0.05509 0.06599 0.1199 0.8059 | |
404 | |
405 OCCURRENCES: | |
406 >chr1:9956513-995671 48 TCACAT 1 18 + | |
407 >chr1:9813405-981360 44 TCACAT 1 66 - | |
408 >chr1:9568576-956877 41 TCACAT 1 33 + | |
409 >chr1:8797248-879744 35 TCACAT 1 32 + | |
410 >chr1:7303541-730374 27 TCACAT 1 80 + | |
411 >chr1:7209035-720923 26 TCACAT 1 127 - | |
412 >chr1:6878570-687877 25 TCACAT 1 101 + | |
413 >chr1:6878570-687877 25 TCACAT 1 51 - | |
414 >chr1:6588721-658892 21 TCACAT 1 22 - | |
415 >chr1:6472202-647240 20 TCACAT 1 74 - | |
416 >chr1:6277750-627795 16 TCACAT 1 31 + | |
417 >chr1:6266967-626716 15 TCACAT 1 171 + | |
418 >chr1:6205539-620573 13 TCACAT 1 33 - | |
419 >chr1:5805347-580554 10 TCACAT 1 131 - | |
420 >chr1:4774948-477514 6 TCACAT 1 132 - | |
421 >chr1:4774948-477514 6 TCACAT 1 19 + | |
422 >chr1:4662531-466273 5 TCACAT 1 31 - | |
423 >chr1:4402453-440265 3 TCACAT 1 135 + | |
424 >chr1:4024990-402519 2 TCACAT 1 66 - | |
425 >chr1:3467418-346761 1 TCACAT 1 79 + | |
426 >chr1:3467418-346761 1 TCACAT 1 53 + | |
427 >chr1:9978791-997899 50 TGACAT 0.870153 84 - | |
428 >chr1:9942670-994287 46 TGACAT 0.870153 93 + | |
429 >chr1:9574131-957433 42 TGACAT 0.870153 111 + | |
430 >chr1:9554705-955490 40 TGACAT 0.870153 53 - | |
431 >chr1:7303541-730374 27 TGACAT 0.870153 99 + | |
432 >chr1:7209035-720923 26 TGACAT 0.870153 121 - | |
433 >chr1:6878570-687877 25 TGACAT 0.870153 69 + | |
434 >chr1:6437830-643803 19 TGACAT 0.870153 6 - | |
435 >chr1:6183701-618390 12 TGACAT 0.870153 140 + | |
436 >chr1:4833767-483396 7 TGACAT 0.870153 29 - | |
437 >chr1:9956513-995671 48 TAACAT 0.868041 137 + | |
438 >chr1:9574131-957433 42 TAACAT 0.868041 104 - | |
439 >chr1:9554705-955490 40 TAACAT 0.868041 47 - | |
440 >chr1:8851545-885174 36 TAACAT 0.868041 100 - | |
441 >chr1:8797248-879744 35 TAACAT 0.868041 103 + | |
442 >chr1:7768736-776893 34 TAACAT 0.868041 80 - | |
443 >chr1:6090845-609104 11 TAACAT 0.868041 154 + | |
444 >chr1:9962925-996312 49 TCAAAT 0.867804 40 - | |
445 >chr1:9932599-993279 45 TCAAAT 0.867804 176 + | |
446 >chr1:9813405-981360 44 TCAAAT 0.867804 55 + | |
447 >chr1:8851545-885174 36 TCAAAT 0.867804 188 - | |
448 >chr1:8851545-885174 36 TCAAAT 0.867804 184 + | |
449 >chr1:8851545-885174 36 TCAAAT 0.867804 96 + | |
450 >chr1:6719561-671976 22 TCAAAT 0.867804 142 + | |
451 >chr1:5805347-580554 10 TCAAAT 0.867804 180 - | |
452 >chr1:5805347-580554 10 TCAAAT 0.867804 121 + | |
453 >chr1:4833767-483396 7 TCAAAT 0.867804 126 - | |
454 >chr1:4833767-483396 7 TCAAAT 0.867804 25 + | |
455 >chr1:4774948-477514 6 TTACAT 0.864876 8 - | |
456 ********** | |
457 | |
458 8) TACATT (AATGTA) 1.773 | |
459 | |
460 Matrix: MAT8 TACATT | |
461 A 0.09867 0.7322 0.1194 0.8806 0.101 0.09423 | |
462 C 0.1068 0.06715 0.743 0.03825 0.03645 0.02894 | |
463 G 0.1046 0.07625 0.0467 0.01049 0.07555 0.07099 | |
464 T 0.6899 0.1244 0.09086 0.07061 0.7871 0.8058 | |
465 | |
466 OCCURRENCES: | |
467 >chr1:9962925-996312 49 TACATT 1 130 + | |
468 >chr1:9942670-994287 46 TACATT 1 158 + | |
469 >chr1:9932599-993279 45 TACATT 1 105 - | |
470 >chr1:9460371-946057 38 TACATT 1 173 + | |
471 >chr1:9013525-901372 37 TACATT 1 59 + | |
472 >chr1:6721868-672206 23 TACATT 1 46 + | |
473 >chr1:6588721-658892 21 TACATT 1 160 - | |
474 >chr1:6472202-647240 20 TACATT 1 92 - | |
475 >chr1:6396504-639670 18 TACATT 1 64 - | |
476 >chr1:6205539-620573 13 TACATT 1 167 + | |
477 >chr1:4024990-402519 2 TACATT 1 121 - | |
478 >chr1:3467418-346761 1 TACATT 1 29 + | |
479 >chr1:4662531-466273 5 CACATT 0.865945 30 - | |
480 >chr1:4024990-402519 2 CACATT 0.865945 65 - | |
481 >chr1:3467418-346761 1 CACATT 0.865945 54 + | |
482 >chr1:9942670-994287 46 GACATT 0.865452 94 + | |
483 >chr1:9554705-955490 40 GACATT 0.865452 52 - | |
484 >chr1:7388801-738900 31 GACATT 0.865452 176 - | |
485 >chr1:7303541-730374 27 GACATT 0.865452 100 + | |
486 >chr1:6437830-643803 19 GACATT 0.865452 84 - | |
487 >chr1:6437830-643803 19 GACATT 0.865452 5 - | |
488 >chr1:6205539-620573 13 GACATT 0.865452 114 + | |
489 >chr1:6183701-618390 12 GACATT 0.865452 83 + | |
490 >chr1:4833767-483396 7 GACATT 0.865452 28 - | |
491 >chr1:4562216-456241 4 GACATT 0.865452 157 + | |
492 >chr1:9978791-997899 50 TAAATT 0.856652 28 + | |
493 >chr1:9962925-996312 49 TAAATT 0.856652 191 - | |
494 >chr1:9948240-994844 47 TAAATT 0.856652 17 - | |
495 >chr1:9942670-994287 46 TAAATT 0.856652 131 - | |
496 >chr1:9813405-981360 44 TAAATT 0.856652 144 + | |
497 >chr1:7768736-776893 34 TAAATT 0.856652 105 + | |
498 >chr1:6205539-620573 13 TAAATT 0.856652 161 - | |
499 >chr1:6090845-609104 11 TAAATT 0.856652 123 - | |
500 >chr1:4774948-477514 6 TAAATT 0.856652 73 + | |
501 >chr1:9956513-995671 48 TATATT 0.85009 155 + | |
502 >chr1:9942670-994287 46 TATATT 0.85009 119 + | |
503 >chr1:9813405-981360 44 TATATT 0.85009 31 - | |
504 >chr1:9013525-901372 37 TATATT 0.85009 78 - | |
505 >chr1:7768736-776893 34 TATATT 0.85009 2 - | |
506 >chr1:7413722-741392 32 TATATT 0.85009 87 + | |
507 >chr1:7413722-741392 32 TATATT 0.85009 85 - | |
508 >chr1:6472202-647240 20 TATATT 0.85009 2 + | |
509 >chr1:6360131-636033 17 TATATT 0.85009 26 - | |
510 >chr1:9813405-981360 44 TACAAT 0.842287 28 + | |
511 >chr1:9535189-953538 39 TACAAT 0.842287 43 + | |
512 >chr1:7386917-738711 29 TACAAT 0.842287 47 + | |
513 >chr1:6878570-687877 25 TACAAT 0.842287 36 - | |
514 >chr1:6090845-609104 11 TACAAT 0.842287 87 - | |
515 >chr1:5805347-580554 10 TACAAT 0.842287 127 + | |
516 >chr1:4774948-477514 6 TACAAT 0.842287 120 - | |
517 ********** | |
518 | |
519 9) TTGACA (TGTCAA) 1.733 | |
520 | |
521 Matrix: MAT9 TTGACA | |
522 A 0.1287 0.06713 0.09732 0.8048 0.1278 0.8784 | |
523 C 0.07599 0.01615 0.136 0.02754 0.7339 0.02517 | |
524 G 0.07764 0.03641 0.6902 0.03821 0.05137 0.01588 | |
525 T 0.7176 0.8803 0.0764 0.1295 0.08697 0.0806 | |
526 | |
527 OCCURRENCES: | |
528 >chr1:9942670-994287 46 TTGACA 1 92 + | |
529 >chr1:8851545-885174 36 TTGACA 1 190 + | |
530 >chr1:8797248-879744 35 TTGACA 1 125 - | |
531 >chr1:7768736-776893 34 TTGACA 1 75 - | |
532 >chr1:7444756-744495 33 TTGACA 1 9 - | |
533 >chr1:7209035-720923 26 TTGACA 1 122 - | |
534 >chr1:6437830-643803 19 TTGACA 1 7 - | |
535 >chr1:6205539-620573 13 TTGACA 1 136 + | |
536 >chr1:6090845-609104 11 TTGACA 1 181 + | |
537 >chr1:5805347-580554 10 TTGACA 1 119 - | |
538 >chr1:4833767-483396 7 TTGACA 1 30 - | |
539 >chr1:4024990-402519 2 TTGACA 1 21 + | |
540 >chr1:6719561-671976 22 TTCACA 0.875237 86 - | |
541 >chr1:6437830-643803 19 TTCACA 0.875237 122 - | |
542 >chr1:6277750-627795 16 TTCACA 0.875237 30 + | |
543 >chr1:6266967-626716 15 TTCACA 0.875237 170 + | |
544 >chr1:6262414-626261 14 TTCACA 0.875237 59 + | |
545 >chr1:6090845-609104 11 TTCACA 0.875237 30 + | |
546 >chr1:5805347-580554 10 TTCACA 0.875237 132 - | |
547 >chr1:5805347-580554 10 TTCACA 0.875237 43 + | |
548 >chr1:5168670-516887 9 TTCACA 0.875237 155 + | |
549 >chr1:5168670-516887 9 TTCACA 0.875237 24 - | |
550 >chr1:4774948-477514 6 TTCACA 0.875237 133 - | |
551 >chr1:4402453-440265 3 TTCACA 0.875237 134 + | |
552 >chr1:9978791-997899 50 ATGACA 0.867422 85 - | |
553 >chr1:9956513-995671 48 ATGACA 0.867422 106 + | |
554 >chr1:9932599-993279 45 ATGACA 0.867422 140 + | |
555 >chr1:9574131-957433 42 ATGACA 0.867422 179 - | |
556 >chr1:9574131-957433 42 ATGACA 0.867422 110 + | |
557 >chr1:7768736-776893 34 ATGACA 0.867422 139 + | |
558 >chr1:6878570-687877 25 ATGACA 0.867422 68 + | |
559 >chr1:6360131-636033 17 ATGACA 0.867422 149 + | |
560 >chr1:6262414-626261 14 ATGACA 0.867422 102 - | |
561 >chr1:6183701-618390 12 ATGACA 0.867422 108 - | |
562 >chr1:6183701-618390 12 ATGACA 0.867422 42 + | |
563 >chr1:6090845-609104 11 ATGACA 0.867422 146 - | |
564 >chr1:9962925-996312 49 TTAACA 0.866518 121 + | |
565 >chr1:9932599-993279 45 TTAACA 0.866518 43 - | |
566 >chr1:9574131-957433 42 TTAACA 0.866518 105 - | |
567 >chr1:9554705-955490 40 TTAACA 0.866518 48 - | |
568 >chr1:8851545-885174 36 TTAACA 0.866518 101 - | |
569 >chr1:6266967-626716 15 TTAACA 0.866518 42 - | |
570 >chr1:6090845-609104 11 TTAACA 0.866518 153 + | |
571 >chr1:4024990-402519 2 TTAACA 0.866518 79 - | |
572 >chr1:9978791-997899 50 TTGATA 0.854356 71 + | |
573 >chr1:9568576-956877 41 TTGATA 0.854356 190 - | |
574 >chr1:9460371-946057 38 TTGATA 0.854356 85 - | |
575 >chr1:6588721-658892 21 TTGATA 0.854356 146 - | |
576 >chr1:6205539-620573 13 TTGATA 0.854356 96 + | |
577 >chr1:4833767-483396 7 TTGATA 0.854356 23 - | |
578 ********** | |
579 | |
580 10) AATAAT (ATTATT) 1.714 | |
581 | |
582 Matrix: MAT10 AATAAT | |
583 A 0.821 0.7797 0.1145 0.7009 0.8508 0.1043 | |
584 C 0.05975 0.04103 0.05818 0.09164 0.07329 0.07718 | |
585 G 0.05042 0.1458 0.06827 0.08449 0.04593 0.05097 | |
586 T 0.06887 0.03344 0.759 0.1229 0.02993 0.7675 | |
587 | |
588 OCCURRENCES: | |
589 >chr1:9962925-996312 49 AATAAT 1 188 + | |
590 >chr1:9962925-996312 49 AATAAT 1 133 - | |
591 >chr1:9942670-994287 46 AATAAT 1 73 - | |
592 >chr1:8797248-879744 35 AATAAT 1 192 - | |
593 >chr1:6878570-687877 25 AATAAT 1 41 + | |
594 >chr1:6719561-671976 22 AATAAT 1 181 + | |
595 >chr1:6719561-671976 22 AATAAT 1 145 + | |
596 >chr1:6472202-647240 20 AATAAT 1 5 - | |
597 >chr1:6437830-643803 19 AATAAT 1 126 + | |
598 >chr1:6396504-639670 18 AATAAT 1 55 - | |
599 >chr1:6090845-609104 11 AATAAT 1 84 - | |
600 >chr1:6090845-609104 11 AATAAT 1 43 - | |
601 >chr1:5805347-580554 10 AATAAT 1 65 + | |
602 >chr1:4024990-402519 2 AATAAT 1 188 - | |
603 >chr1:3467418-346761 1 AATAAT 1 24 + | |
604 >chr1:9962925-996312 49 AATTAT 0.867789 189 - | |
605 >chr1:8797248-879744 35 AATTAT 0.867789 179 + | |
606 >chr1:7768736-776893 34 AATTAT 0.867789 107 + | |
607 >chr1:6719561-671976 22 AATTAT 0.867789 182 - | |
608 >chr1:6719561-671976 22 AATTAT 0.867789 146 - | |
609 >chr1:6588721-658892 21 AATTAT 0.867789 143 + | |
610 >chr1:6437830-643803 19 AATTAT 0.867789 127 - | |
611 >chr1:6396504-639670 18 AATTAT 0.867789 54 + | |
612 >chr1:6266967-626716 15 AATTAT 0.867789 18 + | |
613 >chr1:6090845-609104 11 AATTAT 0.867789 92 + | |
614 >chr1:6090845-609104 11 AATTAT 0.867789 83 + | |
615 >chr1:5805347-580554 10 AATTAT 0.867789 66 - | |
616 >chr1:8851545-885174 36 AATCAT 0.860628 122 + | |
617 >chr1:8797248-879744 35 AATCAT 0.860628 138 - | |
618 >chr1:7444756-744495 33 AATCAT 0.860628 13 + | |
619 >chr1:6090845-609104 11 AATCAT 0.860628 167 - | |
620 >chr1:5168670-516887 9 AATCAT 0.860628 31 - | |
621 >chr1:5072821-507302 8 AATCAT 0.860628 84 - | |
622 >chr1:4774948-477514 6 AATCAT 0.860628 139 - | |
623 >chr1:9978791-997899 50 AGTAAT 0.854996 31 - | |
624 >chr1:9568576-956877 41 AGTAAT 0.854996 154 + | |
625 >chr1:9013525-901372 37 AGTAAT 0.854996 183 + | |
626 >chr1:7209035-720923 26 AGTAAT 0.854996 183 - | |
627 >chr1:6878570-687877 25 AGTAAT 0.854996 64 + | |
628 >chr1:6719561-671976 22 AGTAAT 0.854996 137 - | |
629 >chr1:6588721-658892 21 AGTAAT 0.854996 9 + | |
630 >chr1:6472202-647240 20 AGTAAT 0.854996 176 + | |
631 >chr1:6472202-647240 20 AGTAAT 0.854996 29 + | |
632 >chr1:6360131-636033 17 AGTAAT 0.854996 86 - | |
633 >chr1:6262414-626261 14 AGTAAT 0.854996 160 - | |
634 >chr1:6090845-609104 11 AGTAAT 0.854996 20 + | |
635 >chr1:5805347-580554 10 AGTAAT 0.854996 176 + | |
636 >chr1:5072821-507302 8 AGTAAT 0.854996 46 - | |
637 >chr1:4774948-477514 6 AGTAAT 0.854996 194 + | |
638 >chr1:3467418-346761 1 AGTAAT 0.854996 32 - | |
639 ********** | |
640 | |
641 11) ATGACT (AGTCAT) 1.702 | |
642 | |
643 Matrix: MAT11 ATGACT | |
644 A 0.7923 0.07691 0.08105 0.8363 0.111 0.123 | |
645 C 0.07045 0.02479 0.07396 0.02863 0.7081 0.04261 | |
646 G 0.06487 0.02256 0.6694 0.03558 0.06369 0.01484 | |
647 T 0.07241 0.8757 0.1756 0.0995 0.1172 0.8196 | |
648 | |
649 OCCURRENCES: | |
650 >chr1:9942670-994287 46 ATGACT 1 34 + | |
651 >chr1:9932599-993279 45 ATGACT 1 14 - | |
652 >chr1:9574131-957433 42 ATGACT 1 55 + | |
653 >chr1:9013525-901372 37 ATGACT 1 193 + | |
654 >chr1:7768736-776893 34 ATGACT 1 121 - | |
655 >chr1:7444756-744495 33 ATGACT 1 194 - | |
656 >chr1:7444756-744495 33 ATGACT 1 40 - | |
657 >chr1:7303541-730374 27 ATGACT 1 111 + | |
658 >chr1:6472202-647240 20 ATGACT 1 143 - | |
659 >chr1:6183701-618390 12 ATGACT 1 175 - | |
660 >chr1:4662531-466273 5 ATGACT 1 126 + | |
661 >chr1:9978791-997899 50 ATTACT 0.888601 31 + | |
662 >chr1:9568576-956877 41 ATTACT 0.888601 154 - | |
663 >chr1:9013525-901372 37 ATTACT 0.888601 183 - | |
664 >chr1:7209035-720923 26 ATTACT 0.888601 183 + | |
665 >chr1:6878570-687877 25 ATTACT 0.888601 64 - | |
666 >chr1:6719561-671976 22 ATTACT 0.888601 137 + | |
667 >chr1:6588721-658892 21 ATTACT 0.888601 9 - | |
668 >chr1:6472202-647240 20 ATTACT 0.888601 176 - | |
669 >chr1:6472202-647240 20 ATTACT 0.888601 29 - | |
670 >chr1:6360131-636033 17 ATTACT 0.888601 86 + | |
671 >chr1:6262414-626261 14 ATTACT 0.888601 160 + | |
672 >chr1:6090845-609104 11 ATTACT 0.888601 20 - | |
673 >chr1:5805347-580554 10 ATTACT 0.888601 176 - | |
674 >chr1:5072821-507302 8 ATTACT 0.888601 46 + | |
675 >chr1:4774948-477514 6 ATTACT 0.888601 194 - | |
676 >chr1:3467418-346761 1 ATTACT 0.888601 32 + | |
677 >chr1:8797248-879744 35 ATAACT 0.867272 132 + | |
678 >chr1:7209035-720923 26 ATAACT 0.867272 79 + | |
679 >chr1:6360131-636033 17 ATAACT 0.867272 111 - | |
680 >chr1:6262414-626261 14 ATAACT 0.867272 139 - | |
681 >chr1:6183701-618390 12 ATAACT 0.867272 7 - | |
682 >chr1:5072821-507302 8 ATAACT 0.867272 25 + | |
683 >chr1:9956513-995671 48 ATGATT 0.866692 35 - | |
684 >chr1:9013525-901372 37 ATGATT 0.866692 176 - | |
685 >chr1:8851545-885174 36 ATGATT 0.866692 122 - | |
686 >chr1:8797248-879744 35 ATGATT 0.866692 138 + | |
687 >chr1:7444756-744495 33 ATGATT 0.866692 13 - | |
688 >chr1:6090845-609104 11 ATGATT 0.866692 167 + | |
689 >chr1:5168670-516887 9 ATGATT 0.866692 31 + | |
690 >chr1:5072821-507302 8 ATGATT 0.866692 84 + | |
691 >chr1:4774948-477514 6 ATGATT 0.866692 139 + | |
692 >chr1:8851545-885174 36 ATGAAT 0.865302 86 - | |
693 >chr1:7303541-730374 27 ATGAAT 0.865302 171 - | |
694 >chr1:7303541-730374 27 ATGAAT 0.865302 107 + | |
695 >chr1:6437830-643803 19 ATGAAT 0.865302 130 - | |
696 >chr1:6183701-618390 12 ATGAAT 0.865302 71 + | |
697 >chr1:5072821-507302 8 ATGAAT 0.865302 127 + | |
698 >chr1:5072821-507302 8 ATGAAT 0.865302 87 - | |
699 >chr1:5072821-507302 8 ATGAAT 0.865302 21 + | |
700 ********** | |
701 | |
702 12) TTGAAA (TTTCAA) 1.693 | |
703 | |
704 Matrix: MAT12 TTGAAA | |
705 A 0.08972 0.0524 0.2142 0.8734 0.7765 0.8008 | |
706 C 0.08565 0.01703 0.08046 0.009563 0.09992 0.05955 | |
707 G 0.07526 0.08263 0.6446 0.04169 0.04608 0.03337 | |
708 T 0.7494 0.8479 0.06075 0.07533 0.07746 0.1063 | |
709 | |
710 OCCURRENCES: | |
711 >chr1:9956513-995671 48 TTGAAA 1 180 + | |
712 >chr1:9948240-994844 47 TTGAAA 1 112 + | |
713 >chr1:9932599-993279 45 TTGAAA 1 125 - | |
714 >chr1:8797248-879744 35 TTGAAA 1 175 - | |
715 >chr1:7444756-744495 33 TTGAAA 1 161 - | |
716 >chr1:7388025-738822 30 TTGAAA 1 2 - | |
717 >chr1:7309743-730994 28 TTGAAA 1 146 - | |
718 >chr1:7209035-720923 26 TTGAAA 1 54 - | |
719 >chr1:6750817-675101 24 TTGAAA 1 153 + | |
720 >chr1:6588721-658892 21 TTGAAA 1 101 + | |
721 >chr1:6396504-639670 18 TTGAAA 1 179 + | |
722 >chr1:6266967-626716 15 TTGAAA 1 176 - | |
723 >chr1:6090845-609104 11 TTGAAA 1 102 + | |
724 >chr1:4562216-456241 4 TTGAAA 1 148 - | |
725 >chr1:3467418-346761 1 TTGAAA 1 190 + | |
726 >chr1:6205539-620573 13 TTAAAA 0.903286 157 + | |
727 >chr1:6205539-620573 13 TTAAAA 0.903286 28 + | |
728 >chr1:6090845-609104 11 TTAAAA 0.903286 171 + | |
729 >chr1:6090845-609104 11 TTAAAA 0.903286 151 - | |
730 >chr1:5072821-507302 8 TTAAAA 0.903286 114 + | |
731 >chr1:4024990-402519 2 TTAAAA 0.903286 81 + | |
732 >chr1:3467418-346761 1 TTAAAA 0.903286 184 - | |
733 >chr1:9942670-994287 46 TTGACA 0.847972 92 + | |
734 >chr1:8851545-885174 36 TTGACA 0.847972 190 + | |
735 >chr1:8797248-879744 35 TTGACA 0.847972 125 - | |
736 >chr1:7768736-776893 34 TTGACA 0.847972 75 - | |
737 >chr1:7444756-744495 33 TTGACA 0.847972 9 - | |
738 >chr1:7209035-720923 26 TTGACA 0.847972 122 - | |
739 >chr1:6437830-643803 19 TTGACA 0.847972 7 - | |
740 >chr1:6205539-620573 13 TTGACA 0.847972 136 + | |
741 >chr1:6090845-609104 11 TTGACA 0.847972 181 + | |
742 >chr1:5805347-580554 10 TTGACA 0.847972 119 - | |
743 >chr1:4833767-483396 7 TTGACA 0.847972 30 - | |
744 >chr1:4024990-402519 2 TTGACA 0.847972 21 + | |
745 >chr1:9942670-994287 46 TTGAAT 0.843956 162 + | |
746 >chr1:7444756-744495 33 TTGAAT 0.843956 134 + | |
747 >chr1:7413722-741392 32 TTGAAT 0.843956 123 - | |
748 >chr1:6721868-672206 23 TTGAAT 0.843956 85 + | |
749 >chr1:6277750-627795 16 TTGAAT 0.843956 35 - | |
750 >chr1:6277750-627795 16 TTGAAT 0.843956 25 + | |
751 >chr1:6183701-618390 12 TTGAAT 0.843956 87 + | |
752 >chr1:6090845-609104 11 TTGAAT 0.843956 119 - | |
753 >chr1:6090845-609104 11 TTGAAT 0.843956 115 + | |
754 >chr1:5072821-507302 8 TTGAAT 0.843956 155 - | |
755 >chr1:9978791-997899 50 TTGATA 0.842925 71 + | |
756 >chr1:9568576-956877 41 TTGATA 0.842925 190 - | |
757 >chr1:9460371-946057 38 TTGATA 0.842925 85 - | |
758 >chr1:6588721-658892 21 TTGATA 0.842925 146 - | |
759 >chr1:6205539-620573 13 TTGATA 0.842925 96 + | |
760 >chr1:4833767-483396 7 TTGATA 0.842925 23 - | |
761 ********** | |
762 | |
763 13) ATTTTA (TAAAAT) 1.691 | |
764 | |
765 Matrix: MAT13 ATTTTA | |
766 A 0.7686 0.09324 0.05315 0.07052 0.1079 0.7442 | |
767 C 0.05296 0.05566 0.02564 0.04286 0.09559 0.0825 | |
768 G 0.06642 0.0539 0.07598 0.07754 0.08916 0.06427 | |
769 T 0.112 0.7972 0.8452 0.8091 0.7073 0.1091 | |
770 | |
771 OCCURRENCES: | |
772 >chr1:9956513-995671 48 ATTTTA 1 185 + | |
773 >chr1:9942670-994287 46 ATTTTA 1 135 - | |
774 >chr1:9813405-981360 44 ATTTTA 1 132 - | |
775 >chr1:9013525-901372 37 ATTTTA 1 135 - | |
776 >chr1:9013525-901372 37 ATTTTA 1 113 - | |
777 >chr1:8851545-885174 36 ATTTTA 1 104 - | |
778 >chr1:8797248-879744 35 ATTTTA 1 147 - | |
779 >chr1:7768736-776893 34 ATTTTA 1 135 - | |
780 >chr1:7413722-741392 32 ATTTTA 1 11 + | |
781 >chr1:7388801-738900 31 ATTTTA 1 63 + | |
782 >chr1:7386917-738711 29 ATTTTA 1 31 - | |
783 >chr1:6472202-647240 20 ATTTTA 1 33 + | |
784 >chr1:6266967-626716 15 ATTTTA 1 3 - | |
785 >chr1:6262414-626261 14 ATTTTA 1 184 + | |
786 >chr1:6205539-620573 13 ATTTTA 1 158 - | |
787 >chr1:6205539-620573 13 ATTTTA 1 29 - | |
788 >chr1:6090845-609104 11 ATTTTA 1 150 + | |
789 >chr1:5805347-580554 10 ATTTTA 1 155 + | |
790 >chr1:5072821-507302 8 ATTTTA 1 115 - | |
791 >chr1:4833767-483396 7 ATTTTA 1 122 - | |
792 >chr1:4024990-402519 2 ATTTTA 1 118 - | |
793 >chr1:3467418-346761 1 ATTTTA 1 183 + | |
794 >chr1:3467418-346761 1 ATTTTA 1 134 + | |
795 >chr1:8851545-885174 36 ATTTGA 0.857659 188 + | |
796 >chr1:8851545-885174 36 ATTTGA 0.857659 184 - | |
797 >chr1:8851545-885174 36 ATTTGA 0.857659 96 - | |
798 >chr1:6719561-671976 22 ATTTGA 0.857659 142 - | |
799 >chr1:5805347-580554 10 ATTTGA 0.857659 180 + | |
800 >chr1:5805347-580554 10 ATTTGA 0.857659 121 - | |
801 >chr1:4833767-483396 7 ATTTGA 0.857659 126 + | |
802 >chr1:4833767-483396 7 ATTTGA 0.857659 25 - | |
803 >chr1:9813405-981360 44 ATTGTA 0.83155 28 - | |
804 >chr1:9535189-953538 39 ATTGTA 0.83155 43 - | |
805 >chr1:7386917-738711 29 ATTGTA 0.83155 47 - | |
806 >chr1:6878570-687877 25 ATTGTA 0.83155 36 + | |
807 >chr1:6090845-609104 11 ATTGTA 0.83155 87 + | |
808 >chr1:5805347-580554 10 ATTGTA 0.83155 127 - | |
809 >chr1:4774948-477514 6 ATTGTA 0.83155 120 + | |
810 >chr1:9948240-994844 47 ATTATA 0.829934 57 - | |
811 >chr1:7444756-744495 33 ATTATA 0.829934 71 - | |
812 >chr1:6721868-672206 23 ATTATA 0.829934 124 + | |
813 >chr1:6266967-626716 15 ATTATA 0.829934 19 + | |
814 >chr1:6090845-609104 11 ATTATA 0.829934 93 + | |
815 >chr1:9956513-995671 48 ATGTTA 0.822869 137 - | |
816 >chr1:9574131-957433 42 ATGTTA 0.822869 104 + | |
817 >chr1:9554705-955490 40 ATGTTA 0.822869 47 + | |
818 >chr1:8851545-885174 36 ATGTTA 0.822869 100 + | |
819 >chr1:8797248-879744 35 ATGTTA 0.822869 103 - | |
820 >chr1:7768736-776893 34 ATGTTA 0.822869 80 + | |
821 >chr1:6090845-609104 11 ATGTTA 0.822869 154 - | |
822 ********** | |
823 | |
824 14) TAAACA (TGTTTA) 1.685 | |
825 | |
826 Matrix: MAT14 TAAACA | |
827 A 0.1209 0.7643 0.8407 0.816 0.1373 0.8505 | |
828 C 0.06995 0.06399 0.03895 0.04513 0.685 0.05353 | |
829 G 0.09693 0.07741 0.05489 0.04938 0.08995 0.02176 | |
830 T 0.7122 0.09432 0.06543 0.08946 0.08774 0.07422 | |
831 | |
832 OCCURRENCES: | |
833 >chr1:9948240-994844 47 TAAACA 1 130 + | |
834 >chr1:9942670-994287 46 TAAACA 1 81 + | |
835 >chr1:9932599-993279 45 TAAACA 1 148 - | |
836 >chr1:9574131-957433 42 TAAACA 1 5 + | |
837 >chr1:9013525-901372 37 TAAACA 1 161 - | |
838 >chr1:7768736-776893 34 TAAACA 1 169 + | |
839 >chr1:7388801-738900 31 TAAACA 1 90 + | |
840 >chr1:6472202-647240 20 TAAACA 1 12 - | |
841 >chr1:6360131-636033 17 TAAACA 1 144 + | |
842 >chr1:6360131-636033 17 TAAACA 1 6 - | |
843 >chr1:5805347-580554 10 TAAACA 1 18 + | |
844 >chr1:5072821-507302 8 TAAACA 1 149 - | |
845 >chr1:5072821-507302 8 TAAACA 1 15 + | |
846 >chr1:4562216-456241 4 TAAACA 1 167 + | |
847 >chr1:7209035-720923 26 TAAAGA 0.862934 168 + | |
848 >chr1:6721868-672206 23 TAAAGA 0.862934 96 - | |
849 >chr1:6588721-658892 21 TAAAGA 0.862934 84 - | |
850 >chr1:6437830-643803 19 TAAAGA 0.862934 173 - | |
851 >chr1:6396504-639670 18 TAAAGA 0.862934 5 + | |
852 >chr1:6205539-620573 13 TAAAGA 0.862934 190 + | |
853 >chr1:6205539-620573 13 TAAAGA 0.862934 25 - | |
854 >chr1:4024990-402519 2 TAAAGA 0.862934 36 + | |
855 >chr1:9962925-996312 49 TTAACA 0.845673 121 + | |
856 >chr1:9932599-993279 45 TTAACA 0.845673 43 - | |
857 >chr1:9574131-957433 42 TTAACA 0.845673 105 - | |
858 >chr1:9554705-955490 40 TTAACA 0.845673 48 - | |
859 >chr1:8851545-885174 36 TTAACA 0.845673 101 - | |
860 >chr1:6266967-626716 15 TTAACA 0.845673 42 - | |
861 >chr1:6090845-609104 11 TTAACA 0.845673 153 + | |
862 >chr1:4024990-402519 2 TTAACA 0.845673 79 - | |
863 >chr1:9956513-995671 48 TCAACA 0.838688 85 + | |
864 >chr1:9568576-956877 41 TCAACA 0.838688 88 - | |
865 >chr1:8797248-879744 35 TCAACA 0.838688 127 + | |
866 >chr1:6878570-687877 25 TCAACA 0.838688 2 - | |
867 >chr1:6262414-626261 14 TCAACA 0.838688 130 - | |
868 >chr1:6205539-620573 13 TCAACA 0.838688 134 - | |
869 >chr1:6183701-618390 12 TCAACA 0.838688 54 - | |
870 >chr1:9932599-993279 45 TAATCA 0.832635 46 + | |
871 >chr1:9013525-901372 37 TAATCA 0.832635 175 + | |
872 >chr1:6878570-687877 25 TAATCA 0.832635 91 + | |
873 >chr1:6090845-609104 11 TAATCA 0.832635 168 - | |
874 >chr1:4774948-477514 6 TAATCA 0.832635 140 - | |
875 >chr1:4024990-402519 2 TAATCA 0.832635 186 - | |
876 >chr1:3467418-346761 1 TAATCA 0.832635 50 + | |
877 >chr1:9956513-995671 48 TATACA 0.821406 153 - | |
878 >chr1:9948240-994844 47 TATACA 0.821406 126 - | |
879 >chr1:9568576-956877 41 TATACA 0.821406 107 - | |
880 >chr1:6437830-643803 19 TATACA 0.821406 105 + | |
881 >chr1:6205539-620573 13 TATACA 0.821406 165 + | |
882 >chr1:6183701-618390 12 TATACA 0.821406 10 + | |
883 ********** | |
884 | |
885 15) ATGATT (AATCAT) 1.678 | |
886 | |
887 Matrix: MAT15 ATGATT | |
888 A 0.7798 0.03895 0.1394 0.8016 0.09996 0.05479 | |
889 C 0.04628 0.04674 0.09287 0.04385 0.1069 0.06237 | |
890 G 0.07995 0.03341 0.6306 0.0422 0.05873 0.09202 | |
891 T 0.09401 0.8809 0.1371 0.1123 0.7344 0.7908 | |
892 | |
893 OCCURRENCES: | |
894 >chr1:9956513-995671 48 ATGATT 1 35 - | |
895 >chr1:9013525-901372 37 ATGATT 1 176 - | |
896 >chr1:8851545-885174 36 ATGATT 1 122 - | |
897 >chr1:8797248-879744 35 ATGATT 1 138 + | |
898 >chr1:7444756-744495 33 ATGATT 1 13 - | |
899 >chr1:6090845-609104 11 ATGATT 1 167 + | |
900 >chr1:5168670-516887 9 ATGATT 1 31 + | |
901 >chr1:5072821-507302 8 ATGATT 1 84 + | |
902 >chr1:4774948-477514 6 ATGATT 1 139 + | |
903 >chr1:9962925-996312 49 ATAATT 0.885497 189 + | |
904 >chr1:8797248-879744 35 ATAATT 0.885497 179 - | |
905 >chr1:7768736-776893 34 ATAATT 0.885497 107 - | |
906 >chr1:6719561-671976 22 ATAATT 0.885497 182 + | |
907 >chr1:6719561-671976 22 ATAATT 0.885497 146 + | |
908 >chr1:6588721-658892 21 ATAATT 0.885497 143 - | |
909 >chr1:6437830-643803 19 ATAATT 0.885497 127 + | |
910 >chr1:6396504-639670 18 ATAATT 0.885497 54 - | |
911 >chr1:6266967-626716 15 ATAATT 0.885497 18 - | |
912 >chr1:6090845-609104 11 ATAATT 0.885497 92 - | |
913 >chr1:6090845-609104 11 ATAATT 0.885497 83 - | |
914 >chr1:5805347-580554 10 ATAATT 0.885497 66 + | |
915 >chr1:9962925-996312 49 ATTATT 0.884969 188 - | |
916 >chr1:9962925-996312 49 ATTATT 0.884969 133 + | |
917 >chr1:9942670-994287 46 ATTATT 0.884969 73 + | |
918 >chr1:8797248-879744 35 ATTATT 0.884969 192 + | |
919 >chr1:6878570-687877 25 ATTATT 0.884969 41 - | |
920 >chr1:6719561-671976 22 ATTATT 0.884969 181 - | |
921 >chr1:6719561-671976 22 ATTATT 0.884969 145 - | |
922 >chr1:6472202-647240 20 ATTATT 0.884969 5 + | |
923 >chr1:6437830-643803 19 ATTATT 0.884969 126 - | |
924 >chr1:6396504-639670 18 ATTATT 0.884969 55 + | |
925 >chr1:6090845-609104 11 ATTATT 0.884969 84 + | |
926 >chr1:6090845-609104 11 ATTATT 0.884969 43 + | |
927 >chr1:5805347-580554 10 ATTATT 0.884969 65 - | |
928 >chr1:4024990-402519 2 ATTATT 0.884969 188 + | |
929 >chr1:3467418-346761 1 ATTATT 0.884969 24 - | |
930 >chr1:9978791-997899 50 ATCATT 0.874651 77 - | |
931 >chr1:9932599-993279 45 ATCATT 0.874651 18 + | |
932 >chr1:9013525-901372 37 ATCATT 0.874651 40 - | |
933 >chr1:7444756-744495 33 ATCATT 0.874651 104 - | |
934 >chr1:6277750-627795 16 ATCATT 0.874651 98 + | |
935 >chr1:6205539-620573 13 ATCATT 0.874651 38 + | |
936 >chr1:5168670-516887 9 ATCATT 0.874651 30 - | |
937 >chr1:4774948-477514 6 ATCATT 0.874651 138 - | |
938 >chr1:6472202-647240 20 ATGACT 0.853739 143 - | |
939 >chr1:6183701-618390 12 ATGACT 0.853739 175 - | |
940 >chr1:4662531-466273 5 ATGACT 0.853739 126 + | |
941 >chr1:9942670-994287 46 ACGATT 0.805545 105 - | |
942 >chr1:4833767-483396 7 ACGATT 0.805545 63 - | |
943 >chr1:4662531-466273 5 ACGATT 0.805545 58 - | |
944 ********** | |
945 | |
946 16) AGTATT (AATACT) 1.664 | |
947 | |
948 Matrix: MAT16 AGTATT | |
949 A 0.8169 0.03667 0.1017 0.7024 0.1984 0.05968 | |
950 C 0.01586 0.0534 0.06469 0.08485 0.01561 0.04079 | |
951 G 0.03184 0.739 0.03857 0.072 0.06428 0.04865 | |
952 T 0.1354 0.1709 0.7951 0.1407 0.7217 0.8509 | |
953 | |
954 OCCURRENCES: | |
955 >chr1:9574131-957433 42 AGTATT 1 164 - | |
956 >chr1:8851545-885174 36 AGTATT 1 143 - | |
957 >chr1:7444756-744495 33 AGTATT 1 137 - | |
958 >chr1:7388801-738900 31 AGTATT 1 75 - | |
959 >chr1:7209035-720923 26 AGTATT 1 10 - | |
960 >chr1:6262414-626261 14 AGTATT 1 181 + | |
961 >chr1:5805347-580554 10 AGTATT 1 152 + | |
962 >chr1:4833767-483396 7 AGTATT 1 18 + | |
963 >chr1:4402453-440265 3 AGTATT 1 177 + | |
964 >chr1:9978791-997899 50 AGTAAT 0.881262 31 - | |
965 >chr1:9568576-956877 41 AGTAAT 0.881262 154 + | |
966 >chr1:9013525-901372 37 AGTAAT 0.881262 183 + | |
967 >chr1:7209035-720923 26 AGTAAT 0.881262 183 - | |
968 >chr1:6878570-687877 25 AGTAAT 0.881262 64 + | |
969 >chr1:6719561-671976 22 AGTAAT 0.881262 137 - | |
970 >chr1:6588721-658892 21 AGTAAT 0.881262 9 + | |
971 >chr1:6472202-647240 20 AGTAAT 0.881262 176 + | |
972 >chr1:6472202-647240 20 AGTAAT 0.881262 29 + | |
973 >chr1:6360131-636033 17 AGTAAT 0.881262 86 - | |
974 >chr1:6262414-626261 14 AGTAAT 0.881262 160 - | |
975 >chr1:6090845-609104 11 AGTAAT 0.881262 20 + | |
976 >chr1:5805347-580554 10 AGTAAT 0.881262 176 + | |
977 >chr1:5072821-507302 8 AGTAAT 0.881262 46 - | |
978 >chr1:4774948-477514 6 AGTAAT 0.881262 194 + | |
979 >chr1:3467418-346761 1 AGTAAT 0.881262 32 - | |
980 >chr1:9962925-996312 49 ATTATT 0.871068 188 - | |
981 >chr1:9962925-996312 49 ATTATT 0.871068 133 + | |
982 >chr1:9942670-994287 46 ATTATT 0.871068 73 + | |
983 >chr1:8797248-879744 35 ATTATT 0.871068 192 + | |
984 >chr1:6878570-687877 25 ATTATT 0.871068 41 - | |
985 >chr1:6719561-671976 22 ATTATT 0.871068 181 - | |
986 >chr1:6719561-671976 22 ATTATT 0.871068 145 - | |
987 >chr1:6472202-647240 20 ATTATT 0.871068 5 + | |
988 >chr1:6437830-643803 19 ATTATT 0.871068 126 - | |
989 >chr1:6396504-639670 18 ATTATT 0.871068 55 + | |
990 >chr1:6090845-609104 11 ATTATT 0.871068 84 + | |
991 >chr1:6090845-609104 11 ATTATT 0.871068 43 + | |
992 >chr1:5805347-580554 10 ATTATT 0.871068 65 - | |
993 >chr1:4024990-402519 2 ATTATT 0.871068 188 + | |
994 >chr1:3467418-346761 1 ATTATT 0.871068 24 - | |
995 >chr1:9956513-995671 48 TGTATT 0.845348 68 - | |
996 >chr1:9948240-994844 47 TGTATT 0.845348 84 + | |
997 >chr1:9942670-994287 46 TGTATT 0.845348 156 - | |
998 >chr1:9574131-957433 42 TGTATT 0.845348 48 + | |
999 >chr1:7768736-776893 34 TGTATT 0.845348 126 + | |
1000 >chr1:5072821-507302 8 TGTATT 0.845348 43 + | |
1001 >chr1:4024990-402519 2 TGTATT 0.845348 173 + | |
1002 >chr1:3467418-346761 1 TGTATT 0.845348 114 + | |
1003 >chr1:3467418-346761 1 TGTATT 0.845348 27 - | |
1004 >chr1:3467418-346761 1 TGTATT 0.845348 5 - | |
1005 ********** | |
1006 | |
1007 17) TTGAGT (ACTCAA) 1.574 | |
1008 | |
1009 Matrix: MAT17 TTGAGT | |
1010 A 0.1122 0.08252 0.1535 0.8677 0.167 0.08711 | |
1011 C 0.05038 0.01835 0.1439 0.01705 0.09193 0.05017 | |
1012 G 0.1 0.04409 0.647 0.02826 0.5944 0.03802 | |
1013 T 0.7373 0.855 0.05572 0.08702 0.1467 0.8247 | |
1014 | |
1015 OCCURRENCES: | |
1016 >chr1:9978791-997899 50 TTGAGT 1 34 - | |
1017 >chr1:9956513-995671 48 TTGAGT 1 83 - | |
1018 >chr1:9574131-957433 42 TTGAGT 1 43 + | |
1019 >chr1:9568576-956877 41 TTGAGT 1 90 + | |
1020 >chr1:8851545-885174 36 TTGAGT 1 94 - | |
1021 >chr1:7413722-741392 32 TTGAGT 1 165 + | |
1022 >chr1:7388801-738900 31 TTGAGT 1 78 - | |
1023 >chr1:7309743-730994 28 TTGAGT 1 133 + | |
1024 >chr1:7209035-720923 26 TTGAGT 1 90 + | |
1025 >chr1:6719561-671976 22 TTGAGT 1 140 - | |
1026 >chr1:6262414-626261 14 TTGAGT 1 132 + | |
1027 >chr1:6183701-618390 12 TTGAGT 1 56 + | |
1028 >chr1:5072821-507302 8 TTGAGT 1 174 - | |
1029 >chr1:4833767-483396 7 TTGAGT 1 3 + | |
1030 >chr1:9942670-994287 46 TTGAAT 0.89953 162 + | |
1031 >chr1:7444756-744495 33 TTGAAT 0.89953 134 + | |
1032 >chr1:7413722-741392 32 TTGAAT 0.89953 123 - | |
1033 >chr1:6721868-672206 23 TTGAAT 0.89953 85 + | |
1034 >chr1:6277750-627795 16 TTGAAT 0.89953 35 - | |
1035 >chr1:6277750-627795 16 TTGAAT 0.89953 25 + | |
1036 >chr1:6183701-618390 12 TTGAAT 0.89953 87 + | |
1037 >chr1:6090845-609104 11 TTGAAT 0.89953 119 - | |
1038 >chr1:6090845-609104 11 TTGAAT 0.89953 115 + | |
1039 >chr1:5072821-507302 8 TTGAAT 0.89953 155 - | |
1040 >chr1:9932599-993279 45 TTGATT 0.89477 47 - | |
1041 >chr1:9574131-957433 42 TTGATT 0.89477 147 - | |
1042 >chr1:8851545-885174 36 TTGATT 0.89477 118 - | |
1043 >chr1:8797248-879744 35 TTGATT 0.89477 7 + | |
1044 >chr1:6878570-687877 25 TTGATT 0.89477 92 - | |
1045 >chr1:4833767-483396 7 TTGATT 0.89477 128 + | |
1046 >chr1:4562216-456241 4 TTGATT 0.89477 144 + | |
1047 >chr1:4402453-440265 3 TTGATT 0.89477 130 + | |
1048 >chr1:4024990-402519 2 TTGATT 0.89477 185 + | |
1049 >chr1:9962925-996312 49 TTAAGT 0.884013 119 - | |
1050 >chr1:9932599-993279 45 TTAAGT 0.884013 11 + | |
1051 >chr1:9932599-993279 45 TTAAGT 0.884013 9 - | |
1052 >chr1:9574131-957433 42 TTAAGT 0.884013 58 - | |
1053 >chr1:9013525-901372 37 TTAAGT 0.884013 164 + | |
1054 >chr1:8797248-879744 35 TTAAGT 0.884013 120 + | |
1055 >chr1:8797248-879744 35 TTAAGT 0.884013 84 - | |
1056 >chr1:6396504-639670 18 TTAAGT 0.884013 109 - | |
1057 >chr1:6360131-636033 17 TTAAGT 0.884013 43 - | |
1058 >chr1:6396504-639670 18 TTGACT 0.881899 34 - | |
1059 >chr1:4833767-483396 7 TTGACT 0.881899 6 - | |
1060 >chr1:9813405-981360 44 ATGAGT 0.853079 136 + | |
1061 >chr1:6588721-658892 21 ATGAGT 0.853079 75 - | |
1062 >chr1:6472202-647240 20 ATGAGT 0.853079 20 + | |
1063 >chr1:6277750-627795 16 ATGAGT 0.853079 42 - | |
1064 >chr1:6262414-626261 14 ATGAGT 0.853079 178 + | |
1065 >chr1:6205539-620573 13 ATGAGT 0.853079 20 + | |
1066 ********** | |
1067 | |
1068 18) TAAAAC (GTTTTA) 1.572 | |
1069 | |
1070 Matrix: MAT18 TAAAAC | |
1071 A 0.09976 0.6641 0.8508 0.8037 0.7918 0.1444 | |
1072 C 0.1021 0.08641 0.05693 0.04963 0.05966 0.5613 | |
1073 G 0.05432 0.1092 0.04048 0.04923 0.04498 0.06765 | |
1074 T 0.7438 0.1403 0.05175 0.09743 0.1036 0.2267 | |
1075 | |
1076 OCCURRENCES: | |
1077 >chr1:9813405-981360 44 TAAAAC 1 140 - | |
1078 >chr1:7388801-738900 31 TAAAAC 1 51 + | |
1079 >chr1:7303541-730374 27 TAAAAC 1 12 + | |
1080 >chr1:6472202-647240 20 TAAAAC 1 133 - | |
1081 >chr1:4774948-477514 6 TAAAAC 1 124 + | |
1082 >chr1:4662531-466273 5 TAAAAC 1 38 + | |
1083 >chr1:4024990-402519 2 TAAAAC 1 82 + | |
1084 >chr1:9956513-995671 48 TAAAAT 0.917837 185 - | |
1085 >chr1:9942670-994287 46 TAAAAT 0.917837 135 + | |
1086 >chr1:9813405-981360 44 TAAAAT 0.917837 132 + | |
1087 >chr1:9013525-901372 37 TAAAAT 0.917837 135 + | |
1088 >chr1:9013525-901372 37 TAAAAT 0.917837 113 + | |
1089 >chr1:8851545-885174 36 TAAAAT 0.917837 104 + | |
1090 >chr1:8797248-879744 35 TAAAAT 0.917837 147 + | |
1091 >chr1:7768736-776893 34 TAAAAT 0.917837 135 + | |
1092 >chr1:7413722-741392 32 TAAAAT 0.917837 11 - | |
1093 >chr1:7388801-738900 31 TAAAAT 0.917837 63 - | |
1094 >chr1:7386917-738711 29 TAAAAT 0.917837 31 + | |
1095 >chr1:6472202-647240 20 TAAAAT 0.917837 33 - | |
1096 >chr1:6266967-626716 15 TAAAAT 0.917837 3 + | |
1097 >chr1:6262414-626261 14 TAAAAT 0.917837 184 - | |
1098 >chr1:6205539-620573 13 TAAAAT 0.917837 158 + | |
1099 >chr1:6205539-620573 13 TAAAAT 0.917837 29 + | |
1100 >chr1:6090845-609104 11 TAAAAT 0.917837 150 - | |
1101 >chr1:5805347-580554 10 TAAAAT 0.917837 155 - | |
1102 >chr1:5072821-507302 8 TAAAAT 0.917837 115 + | |
1103 >chr1:4833767-483396 7 TAAAAT 0.917837 122 + | |
1104 >chr1:4024990-402519 2 TAAAAT 0.917837 118 + | |
1105 >chr1:3467418-346761 1 TAAAAT 0.917837 183 - | |
1106 >chr1:3467418-346761 1 TAAAAT 0.917837 134 - | |
1107 >chr1:9962925-996312 49 TTAAAC 0.871367 7 + | |
1108 >chr1:9942670-994287 46 TTAAAC 0.871367 80 + | |
1109 >chr1:9013525-901372 37 TTAAAC 0.871367 162 - | |
1110 >chr1:9013525-901372 37 TTAAAC 0.871367 110 - | |
1111 >chr1:8797248-879744 35 TTAAAC 0.871367 118 - | |
1112 >chr1:7444756-744495 33 TTAAAC 0.871367 99 - | |
1113 >chr1:7413722-741392 32 TTAAAC 0.871367 188 - | |
1114 >chr1:7388801-738900 31 TTAAAC 0.871367 37 + | |
1115 >chr1:6360131-636033 17 TTAAAC 0.871367 143 + | |
1116 >chr1:6360131-636033 17 TTAAAC 0.871367 7 - | |
1117 >chr1:5805347-580554 10 TTAAAC 0.871367 17 + | |
1118 >chr1:5072821-507302 8 TTAAAC 0.871367 150 - | |
1119 >chr1:4833767-483396 7 TAAATC 0.831007 94 - | |
1120 >chr1:4662531-466273 5 TAAATC 0.831007 56 + | |
1121 >chr1:9574131-957433 42 TAATAC 0.826572 163 + | |
1122 >chr1:7768736-776893 34 TAATAC 0.826572 127 - | |
1123 >chr1:5072821-507302 8 TAATAC 0.826572 44 - | |
1124 >chr1:4833767-483396 7 TAATAC 0.826572 19 - | |
1125 >chr1:3467418-346761 1 TAATAC 0.826572 26 + | |
1126 >chr1:3467418-346761 1 TAATAC 0.826572 4 + | |
1127 ********** | |
1128 | |
1129 19) GTGAAT (ATTCAC) 1.568 | |
1130 | |
1131 Matrix: MAT19 GTGAAT | |
1132 A 0.1593 0.04483 0.06949 0.8955 0.7175 0.1105 | |
1133 C 0.07553 0.01876 0.09003 0.01629 0.08374 0.06563 | |
1134 G 0.6152 0.0609 0.7443 0.03019 0.08214 0.05749 | |
1135 T 0.15 0.8755 0.09618 0.05804 0.1166 0.7664 | |
1136 | |
1137 OCCURRENCES: | |
1138 >chr1:9956513-995671 48 GTGAAT 1 79 - | |
1139 >chr1:7209035-720923 26 GTGAAT 1 156 - | |
1140 >chr1:6878570-687877 25 GTGAAT 1 53 + | |
1141 >chr1:6588721-658892 21 GTGAAT 1 30 - | |
1142 >chr1:6437830-643803 19 GTGAAT 1 123 + | |
1143 >chr1:6277750-627795 16 GTGAAT 1 29 - | |
1144 >chr1:6266967-626716 15 GTGAAT 1 15 + | |
1145 >chr1:6262414-626261 14 GTGAAT 1 174 + | |
1146 >chr1:5168670-516887 9 GTGAAT 1 154 - | |
1147 >chr1:4402453-440265 3 GTGAAT 1 133 - | |
1148 >chr1:4024990-402519 2 GTGAAT 1 62 + | |
1149 >chr1:9574131-957433 42 ATGAAT 0.89386 83 + | |
1150 >chr1:9574131-957433 42 ATGAAT 0.89386 51 - | |
1151 >chr1:9013525-901372 37 ATGAAT 0.89386 117 - | |
1152 >chr1:8851545-885174 36 ATGAAT 0.89386 86 - | |
1153 >chr1:7303541-730374 27 ATGAAT 0.89386 171 - | |
1154 >chr1:7303541-730374 27 ATGAAT 0.89386 107 + | |
1155 >chr1:6437830-643803 19 ATGAAT 0.89386 130 - | |
1156 >chr1:6183701-618390 12 ATGAAT 0.89386 71 + | |
1157 >chr1:5072821-507302 8 ATGAAT 0.89386 127 + | |
1158 >chr1:5072821-507302 8 ATGAAT 0.89386 87 - | |
1159 >chr1:5072821-507302 8 ATGAAT 0.89386 21 + | |
1160 >chr1:9942670-994287 46 TTGAAT 0.891676 162 + | |
1161 >chr1:7444756-744495 33 TTGAAT 0.891676 134 + | |
1162 >chr1:7413722-741392 32 TTGAAT 0.891676 123 - | |
1163 >chr1:6721868-672206 23 TTGAAT 0.891676 85 + | |
1164 >chr1:6277750-627795 16 TTGAAT 0.891676 35 - | |
1165 >chr1:6277750-627795 16 TTGAAT 0.891676 25 + | |
1166 >chr1:6183701-618390 12 TTGAAT 0.891676 87 + | |
1167 >chr1:6090845-609104 11 TTGAAT 0.891676 119 - | |
1168 >chr1:6090845-609104 11 TTGAAT 0.891676 115 + | |
1169 >chr1:5072821-507302 8 TTGAAT 0.891676 155 - | |
1170 >chr1:9956513-995671 48 GTGATT 0.860082 176 + | |
1171 >chr1:9932599-993279 45 GTGATT 0.860082 129 - | |
1172 >chr1:9568576-956877 41 GTGATT 0.860082 22 + | |
1173 >chr1:9554705-955490 40 GTGATT 0.860082 126 + | |
1174 >chr1:6472202-647240 20 GTGATT 0.860082 76 + | |
1175 >chr1:4833767-483396 7 GTGATT 0.860082 188 - | |
1176 >chr1:3467418-346761 1 GTGATT 0.860082 51 - | |
1177 >chr1:9956513-995671 48 GTTAAT 0.849088 112 + | |
1178 >chr1:9932599-993279 45 GTTAAT 0.849088 44 + | |
1179 >chr1:9574131-957433 42 GTTAAT 0.849088 106 + | |
1180 >chr1:9554705-955490 40 GTTAAT 0.849088 49 + | |
1181 >chr1:9013525-901372 37 GTTAAT 0.849088 173 + | |
1182 >chr1:6721868-672206 23 GTTAAT 0.849088 172 - | |
1183 >chr1:4662531-466273 5 GTTAAT 0.849088 159 - | |
1184 >chr1:9942670-994287 46 GTCAAT 0.847655 91 - | |
1185 >chr1:7768736-776893 34 GTCAAT 0.847655 76 + | |
1186 >chr1:7444756-744495 33 GTCAAT 0.847655 10 + | |
1187 >chr1:7209035-720923 26 GTCAAT 0.847655 123 + | |
1188 ********** | |
1189 | |
1190 20) AATACA (TGTATT) 1.564 | |
1191 | |
1192 Matrix: MAT20 AATACA | |
1193 A 0.8268 0.7796 0.1396 0.6772 0.1349 0.8374 | |
1194 C 0.05488 0.04317 0.05118 0.06514 0.7076 0.03498 | |
1195 G 0.04696 0.05148 0.06801 0.08048 0.04932 0.01976 | |
1196 T 0.0714 0.1257 0.7412 0.1771 0.1081 0.1079 | |
1197 | |
1198 OCCURRENCES: | |
1199 >chr1:9962925-996312 49 AATACA 1 83 + | |
1200 >chr1:9956513-995671 48 AATACA 1 68 + | |
1201 >chr1:9948240-994844 47 AATACA 1 84 - | |
1202 >chr1:9942670-994287 46 AATACA 1 156 + | |
1203 >chr1:9574131-957433 42 AATACA 1 48 - | |
1204 >chr1:7768736-776893 34 AATACA 1 126 - | |
1205 >chr1:5072821-507302 8 AATACA 1 43 - | |
1206 >chr1:4024990-402519 2 AATACA 1 173 - | |
1207 >chr1:3467418-346761 1 AATACA 1 114 - | |
1208 >chr1:3467418-346761 1 AATACA 1 27 + | |
1209 >chr1:3467418-346761 1 AATACA 1 5 + | |
1210 >chr1:9956513-995671 48 AATTCA 0.883548 78 + | |
1211 >chr1:9942670-994287 46 AATTCA 0.883548 163 - | |
1212 >chr1:9013525-901372 37 AATTCA 0.883548 116 + | |
1213 >chr1:8851545-885174 36 AATTCA 0.883548 85 + | |
1214 >chr1:7303541-730374 27 AATTCA 0.883548 56 + | |
1215 >chr1:6878570-687877 25 AATTCA 0.883548 86 - | |
1216 >chr1:6878570-687877 25 AATTCA 0.883548 54 - | |
1217 >chr1:6721868-672206 23 AATTCA 0.883548 72 + | |
1218 >chr1:6437830-643803 19 AATTCA 0.883548 129 + | |
1219 >chr1:6277750-627795 16 AATTCA 0.883548 28 + | |
1220 >chr1:6277750-627795 16 AATTCA 0.883548 26 - | |
1221 >chr1:6266967-626716 15 AATTCA 0.883548 16 - | |
1222 >chr1:6090845-609104 11 AATTCA 0.883548 118 + | |
1223 >chr1:6090845-609104 11 AATTCA 0.883548 116 - | |
1224 >chr1:5072821-507302 8 AATTCA 0.883548 154 + | |
1225 >chr1:9956513-995671 48 AATATA 0.860396 155 - | |
1226 >chr1:9942670-994287 46 AATATA 0.860396 119 - | |
1227 >chr1:9813405-981360 44 AATATA 0.860396 31 + | |
1228 >chr1:9013525-901372 37 AATATA 0.860396 78 + | |
1229 >chr1:7768736-776893 34 AATATA 0.860396 2 + | |
1230 >chr1:7413722-741392 32 AATATA 0.860396 87 - | |
1231 >chr1:7413722-741392 32 AATATA 0.860396 85 + | |
1232 >chr1:6472202-647240 20 AATATA 0.860396 2 - | |
1233 >chr1:6360131-636033 17 AATATA 0.860396 26 + | |
1234 >chr1:9813405-981360 44 ATTACA 0.84772 147 + | |
1235 >chr1:6878570-687877 25 ATTACA 0.84772 38 - | |
1236 >chr1:6719561-671976 22 ATTACA 0.84772 127 + | |
1237 >chr1:6588721-658892 21 ATTACA 0.84772 140 - | |
1238 >chr1:6090845-609104 11 ATTACA 0.84772 89 - | |
1239 >chr1:5805347-580554 10 ATTACA 0.84772 147 + | |
1240 >chr1:5805347-580554 10 ATTACA 0.84772 125 + | |
1241 >chr1:4833767-483396 7 ATTACA 0.84772 107 - | |
1242 >chr1:4774948-477514 6 ATTACA 0.84772 9 - | |
1243 >chr1:7388801-738900 31 AATACT 0.830134 75 + | |
1244 >chr1:7209035-720923 26 AATACT 0.830134 10 + | |
1245 >chr1:6262414-626261 14 AATACT 0.830134 181 - | |
1246 >chr1:5805347-580554 10 AATACT 0.830134 152 - | |
1247 >chr1:4833767-483396 7 AATACT 0.830134 18 - | |
1248 >chr1:4402453-440265 3 AATACT 0.830134 177 - | |
1249 ********** | |
1250 |