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| author | pjbriggs |
|---|---|
| date | Tue, 09 Dec 2014 11:27:19 -0500 |
| parents | 496bc4eff47e |
| children |
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COMMAND LINE: weeder2 -f weeder_in.fa -chipseq -sim 0.95 -O MM MOTIFS SUMMARY: 1) GTTTCAATTA (TAATTGAAAC) 2.38 2) CATTTTAA (TTAAAATG) 2.082 3) GTGAATTA (TAATTCAC) 1.969 4) TCAATCAT (ATGATTGA) 1.944 5) TGTTTAAT (ATTAAACA) 1.874 6) ATTACT (AGTAAT) 1.823 7) TCACAT (ATGTGA) 1.8 8) TACATT (AATGTA) 1.773 9) TTGACA (TGTCAA) 1.733 10) AATAAT (ATTATT) 1.714 11) ATGACT (AGTCAT) 1.702 12) TTGAAA (TTTCAA) 1.693 13) ATTTTA (TAAAAT) 1.691 14) TAAACA (TGTTTA) 1.685 15) ATGATT (AATCAT) 1.678 16) AGTATT (AATACT) 1.664 17) TTGAGT (ACTCAA) 1.574 18) TAAAAC (GTTTTA) 1.572 19) GTGAAT (ATTCAC) 1.568 20) AATACA (TGTATT) 1.564 DETAILED RESULTS: 1) GTTTCAATTA (TAATTGAAAC) 2.38 Matrix: MAT1 GTTTCAATTA A 0.1739 0.08497 0.1198 0.1538 0.186 0.8184 0.6871 0.09156 0.1002 0.7403 C 0.06162 0.05256 0.05743 0.07398 0.5592 0.08087 0.0987 0.08757 0.149 0.08036 G 0.591 0.06033 0.07754 0.07127 0.1033 0.0563 0.08422 0.04673 0.08862 0.06081 T 0.1735 0.8021 0.7452 0.701 0.1515 0.04446 0.1299 0.7741 0.6622 0.1185 OCCURRENCES: >chr1:8797248-879744 35 GTTTCAATTA 1 174 + >chr1:3467418-346761 1 TTTTCAATTA 0.934855 187 - >chr1:5072821-507302 8 GTTTGAATTA 0.928879 153 - >chr1:9932599-993279 45 GTTTCAATCA 0.919923 124 + >chr1:9013525-901372 37 GTTTCACTTA 0.908195 51 + >chr1:9956513-995671 48 GTTTCCATTA 0.88494 114 - >chr1:9813405-981360 44 TTTTAAATTA 0.876639 141 + >chr1:7768736-776893 34 ATTTTAATTA 0.871314 131 - >chr1:9956513-995671 48 ATTTCAATCA 0.854845 177 - >chr1:7444756-744495 33 GTTTAAATGA 0.852292 99 + >chr1:7386917-738711 29 TTTACAATTA 0.849485 45 + >chr1:7303541-730374 27 GTTTTAATGA 0.8469 8 - >chr1:5805347-580554 10 GTTCAAATTA 0.843965 178 - >chr1:7768736-776893 34 GTATTAATTA 0.83883 127 + >chr1:6588721-658892 21 GTTGTAATTA 0.83815 138 + >chr1:7388025-738822 30 CTTTCAATCA 0.83733 1 + >chr1:9962925-996312 49 GTCTAAATTA 0.834485 190 - >chr1:4562216-456241 4 ATTTCAACTA 0.827808 147 + >chr1:6878570-687877 25 GTTTTGATTA 0.817499 91 - >chr1:6396504-639670 18 GTTTCATTTT 0.816051 171 + >chr1:7768736-776893 34 GTTTCATCTA 0.805952 147 + >chr1:9460371-946057 38 GTATCAATTT 0.805422 84 + >chr1:6721868-672206 23 GTTTCAGATA 0.799444 28 - >chr1:6090845-609104 11 TTTTTAATCA 0.79117 168 - >chr1:9948240-994844 47 GTTTCAACTC 0.789921 109 - >chr1:6266967-626716 15 GCTCCAATTA 0.785236 145 - >chr1:5072821-507302 8 GTTTAATTCA 0.774774 150 + >chr1:6090845-609104 11 ATTGTAATTA 0.773071 87 + >chr1:8851545-885174 36 TTTTGACTTA 0.771928 49 - >chr1:6878570-687877 25 ATTACAATCA 0.769475 34 - >chr1:6090845-609104 11 GTTAAAATGA 0.766922 148 - >chr1:4662531-466273 5 GTTTTACTCA 0.764511 34 - >chr1:4562216-456241 4 GTTGAAATCA 0.763465 145 - >chr1:6090845-609104 11 ATTACAATAA 0.761859 85 - >chr1:9013525-901372 37 GTTTAAGTAA 0.760027 162 + >chr1:6205539-620573 13 GTTAAAATTT 0.7594 156 + >chr1:7413722-741392 32 TTTTCATTGA 0.758428 125 - >chr1:9932599-993279 45 GTTTGATTAA 0.754251 45 - >chr1:6588721-658892 21 TTATCAATAA 0.749598 145 + >chr1:6205539-620573 13 GTATAAATTT 0.747207 160 - >chr1:4774948-477514 6 TTTACAATTC 0.74652 118 - >chr1:4833767-483396 7 GGTTAAATCA 0.745976 183 + >chr1:6588721-658892 21 ATTACAACTA 0.742438 136 - >chr1:9948240-994844 47 GTTGAAACTA 0.736427 111 + >chr1:4833767-483396 7 ATTACAAGTA 0.736066 103 - >chr1:9574131-957433 42 ATTACCATTA 0.734492 157 - >chr1:6721868-672206 23 AATTCAGTTA 0.728969 72 + >chr1:4774948-477514 6 GATCTAATTA 0.726685 11 - >chr1:6266967-626716 15 ATTTCAACTC 0.724842 175 + >chr1:4833767-483396 7 GTAACGATTA 0.698174 62 - ********** 2) CATTTTAA (TTAAAATG) 2.082 Matrix: MAT2 CATTTTAA A 0.216 0.8128 0.1075 0.04678 0.1112 0.1399 0.7346 0.7969 C 0.5444 0.04193 0.0509 0.03932 0.0429 0.08711 0.1099 0.09147 G 0.1067 0.03289 0.07156 0.0785 0.0966 0.09202 0.05706 0.0382 T 0.1328 0.1124 0.77 0.8354 0.7493 0.681 0.09836 0.0734 OCCURRENCES: >chr1:9813405-981360 44 CATTTTAA 1 131 - >chr1:7768736-776893 34 CATTTTAA 1 134 - >chr1:7388801-738900 31 CATTTTAA 1 62 + >chr1:6205539-620573 13 CATTTTAA 1 28 - >chr1:6090845-609104 11 CATTTTAA 1 149 + >chr1:3467418-346761 1 CATTTTAA 1 182 + >chr1:9942670-994287 46 AATTTTAA 0.939956 134 - >chr1:9013525-901372 37 AATTTTAA 0.939956 112 - >chr1:6205539-620573 13 AATTTTAA 0.939956 157 - >chr1:8851545-885174 36 TATTTTAA 0.924741 103 - >chr1:6262414-626261 14 TATTTTAA 0.924741 183 + >chr1:7386917-738711 29 GATTTTAA 0.919973 30 - >chr1:6266967-626716 15 GATTTTAA 0.919973 2 - >chr1:5072821-507302 8 GATTTTAA 0.919973 114 - >chr1:7444756-744495 33 CATTTAAA 0.901069 100 - >chr1:9932599-993279 45 CATTTGAA 0.892317 175 - >chr1:6266967-626716 15 CATTTCAA 0.891418 174 + >chr1:6750817-675101 24 CATTTTCA 0.885779 154 - >chr1:6090845-609104 11 CATTTTCA 0.885779 5 + >chr1:5168670-516887 9 CATTTTCA 0.885779 26 - >chr1:6360131-636033 17 CATTTTTA 0.883664 135 + >chr1:9948240-994844 47 CATTATAA 0.883344 56 - >chr1:5805347-580554 10 CATTGTAA 0.880668 126 - >chr1:9948240-994844 47 CAATTTAA 0.878877 16 + >chr1:9942670-994287 46 CAATTTAA 0.878877 130 + >chr1:6090845-609104 11 CAATTTAA 0.878877 122 + >chr1:6396504-639670 18 CATTTTGA 0.876113 175 + >chr1:9013525-901372 37 CAGTTTAA 0.872299 108 + >chr1:6266967-626716 15 CTTTTTAA 0.871938 44 - >chr1:6262414-626261 14 CTTTTTAA 0.871938 187 - >chr1:6090845-609104 11 CTTTTTAA 0.871938 171 - >chr1:4774948-477514 6 CATTCTAA 0.870849 60 + >chr1:6090845-609104 11 CACTTTAA 0.868521 126 - >chr1:8797248-879744 35 CATTTTAT 0.867711 146 - >chr1:4024990-402519 2 CATTTTAG 0.861275 117 - >chr1:8851545-885174 36 AATTTGAA 0.832272 183 - >chr1:5805347-580554 10 AATTTGAA 0.832272 179 + >chr1:9956513-995671 48 AATTTCAA 0.831373 180 - >chr1:6588721-658892 21 AATTTCAA 0.831373 101 - >chr1:3467418-346761 1 AATTTTCA 0.825735 191 - >chr1:7386917-738711 29 AATTGTAA 0.820624 46 - >chr1:4774948-477514 6 AATTGTAA 0.820624 119 + >chr1:9956513-995671 48 AATTTTAC 0.810972 184 + >chr1:7413722-741392 32 AATTTTAC 0.810972 10 + >chr1:6472202-647240 20 AATTTTAC 0.810972 32 + >chr1:6090845-609104 11 TATTGTAA 0.805409 86 + >chr1:9554705-955490 40 AATGTTAA 0.801568 46 + >chr1:8851545-885174 36 AATGTTAA 0.801568 99 + >chr1:6878570-687877 25 GATTGTAA 0.800641 35 + >chr1:7444756-744495 33 CATTATAC 0.75436 70 - ********** 3) GTGAATTA (TAATTCAC) 1.969 Matrix: MAT3 GTGAATTA A 0.2434 0.0588 0.09038 0.7708 0.7064 0.0692 0.08129 0.7448 C 0.08343 0.02873 0.1008 0.06039 0.0821 0.07782 0.09324 0.09242 G 0.5181 0.06202 0.6983 0.08538 0.05523 0.08203 0.1107 0.09517 T 0.1551 0.8504 0.1106 0.08347 0.1562 0.7709 0.7148 0.0676 OCCURRENCES: >chr1:6266967-626716 15 GTGAATTA 1 15 + >chr1:8851545-885174 36 ATGAATTA 0.94756 84 - >chr1:6437830-643803 19 ATGAATTA 0.94756 128 - >chr1:5072821-507302 8 TTGAATTA 0.930703 153 - >chr1:6878570-687877 25 CTGAATTA 0.917022 85 + >chr1:6721868-672206 23 CTGAATTA 0.917022 71 - >chr1:9568576-956877 41 GTGATTTA 0.89497 22 + >chr1:4833767-483396 7 GTGATTTA 0.89497 186 - >chr1:6262414-626261 14 GTGAATGA 0.884673 174 + >chr1:4402453-440265 3 GTGAATCA 0.881343 131 - >chr1:6437830-643803 19 GTGAATAA 0.879062 123 + >chr1:9956513-995671 48 GTGAATTG 0.875981 77 - >chr1:6878570-687877 25 GTGAATTG 0.875981 53 + >chr1:6277750-627795 16 GTGAATTC 0.875456 27 - >chr1:7768736-776893 34 GTGGATTA 0.86916 11 + >chr1:6721868-672206 23 GTGGATTA 0.86916 168 + >chr1:3467418-346761 1 GTGTATTA 0.868795 4 - >chr1:7209035-720923 26 GTGAAGTA 0.868484 12 - >chr1:6183701-618390 12 GTGAACTA 0.867682 60 + >chr1:4024990-402519 2 GTGAACTA 0.867682 97 - >chr1:6396504-639670 18 GGGAATTA 0.849489 51 + >chr1:7768736-776893 34 ATTAATTA 0.835366 129 + >chr1:9978791-997899 50 ATAAATTA 0.831511 27 + >chr1:7768736-776893 34 ATAAATTA 0.831511 104 + >chr1:6183701-618390 12 ATGAATCA 0.828904 71 + >chr1:5072821-507302 8 ATGAATCA 0.828904 85 - >chr1:9932599-993279 45 ATGACTTA 0.828376 12 - >chr1:9574131-957433 42 ATGACTTA 0.828376 55 + >chr1:5072821-507302 8 ATGAATAA 0.826623 21 + >chr1:9574131-957433 42 TTGATTTA 0.825673 145 - >chr1:8797248-879744 35 TTGATTTA 0.825673 7 + >chr1:8797248-879744 35 TTCAATTA 0.816637 176 + >chr1:3467418-346761 1 TTCAATTA 0.816637 187 - >chr1:7768736-776893 34 ATGTATTA 0.816356 125 + >chr1:5072821-507302 8 ATGTATTA 0.816356 42 + >chr1:3467418-346761 1 ATGTATTA 0.816356 26 - >chr1:9568576-956877 41 ATGAAGTA 0.816044 150 + >chr1:6721868-672206 23 TTGAATGA 0.815376 85 + >chr1:7209035-720923 26 ATGAACTA 0.815242 42 + >chr1:6878570-687877 25 ATGCATTA 0.81195 43 - >chr1:8851545-885174 36 TTGACTTA 0.811518 49 - >chr1:9942670-994287 46 TTGAATTG 0.806684 162 + >chr1:6090845-609104 11 TTGCATTA 0.795092 39 + >chr1:6719561-671976 22 ACGAATTA 0.790695 71 - >chr1:9942670-994287 46 GTCATTTA 0.780905 11 - >chr1:6472202-647240 20 GTCATTTA 0.780905 144 + >chr1:9956513-995671 48 GTGATTGA 0.779643 176 + >chr1:9932599-993279 45 GTGATTGA 0.779643 127 - >chr1:4774948-477514 6 GTGATCTA 0.762652 15 - >chr1:6205539-620573 13 GTCTATTA 0.75473 143 + ********** 4) TCAATCAT (ATGATTGA) 1.944 Matrix: MAT4 TCAATCAT A 0.05132 0.186 0.8183 0.6756 0.1425 0.08545 0.8726 0.1838 C 0.02852 0.5378 0.07891 0.05957 0.02786 0.6724 0.03639 0.1337 G 0.0695 0.1008 0.02175 0.09712 0.07326 0.07966 0.0383 0.06208 T 0.8507 0.1753 0.08099 0.1677 0.7564 0.1625 0.05268 0.6204 OCCURRENCES: >chr1:8851545-885174 36 TCAATCAT 1 120 + >chr1:7444756-744495 33 TCAATCAT 1 11 + >chr1:9013525-901372 37 TTAATCAT 0.932721 174 + >chr1:6090845-609104 11 TTAATCAT 0.932721 167 - >chr1:4774948-477514 6 TTAATCAT 0.932721 139 - >chr1:4833767-483396 7 TCAATCAA 0.918952 128 - >chr1:5072821-507302 8 TGAATCAT 0.918887 84 - >chr1:9956513-995671 48 TCAATCAC 0.909665 176 - >chr1:9932599-993279 45 TCAATCAC 0.909665 127 + >chr1:9574131-957433 42 TCATTCAT 0.90572 83 - >chr1:7303541-730374 27 TCATTCAT 0.90572 107 - >chr1:8797248-879744 35 TCAATTAT 0.905366 177 + >chr1:7388025-738822 30 TCAATCAG 0.896366 4 + >chr1:7444756-744495 33 TCAAACAT 0.886061 130 - >chr1:6472202-647240 20 TCACTCAT 0.885652 20 - >chr1:8797248-879744 35 TCTATCAT 0.863139 56 + >chr1:6277750-627795 16 TCTATCAT 0.863139 95 + >chr1:9574131-957433 42 TCCATCAT 0.862751 116 + >chr1:6266967-626716 15 TCCATCAT 0.862751 112 - >chr1:9574131-957433 42 TAAATCAA 0.853657 145 + >chr1:8797248-879744 35 TAAATCAA 0.853657 7 - >chr1:9932599-993279 45 TTAATCAA 0.851673 45 + >chr1:6878570-687877 25 TTAATCAA 0.851673 90 + >chr1:7386917-738711 29 TCAATCCT 0.844783 2 + >chr1:9568576-956877 41 TAAATCAC 0.84437 22 - >chr1:4833767-483396 7 TAAATCAC 0.84437 186 + >chr1:8851545-885174 36 TAATTCAT 0.840425 84 + >chr1:6437830-643803 19 TAATTCAT 0.840425 128 + >chr1:9962925-996312 49 TAAATTAT 0.84007 189 - >chr1:7768736-776893 34 TAAATTAT 0.84007 105 + >chr1:7303541-730374 27 TTATTCAT 0.838441 169 + >chr1:5072821-507302 8 TTATTCAT 0.838441 21 - >chr1:4402453-440265 3 TGAATCAA 0.837839 130 - >chr1:9932599-993279 45 TAAGTCAT 0.827328 12 + >chr1:9574131-957433 42 TAAGTCAT 0.827328 55 - >chr1:6721868-672206 23 TCATTCAA 0.824672 85 - >chr1:6183701-618390 12 TGATTCAT 0.824607 71 - >chr1:5072821-507302 8 TGATTCAT 0.824607 85 + >chr1:3467418-346761 1 TCAATTAA 0.824318 186 - >chr1:6437830-643803 19 TGAATTAT 0.824253 127 - >chr1:6266967-626716 15 TGAATTAT 0.824253 16 + >chr1:4024990-402519 2 TAAAACAT 0.820765 82 + >chr1:9942670-994287 46 TTAAACAT 0.818782 80 + >chr1:6360131-636033 17 TTAAACAT 0.818782 143 + >chr1:5072821-507302 8 TTAAACAT 0.818782 148 - >chr1:6588721-658892 21 TCAATAAC 0.800726 148 + >chr1:6262414-626261 14 TCAGTTAT 0.797989 137 + >chr1:6205539-620573 13 TCTATCAA 0.782091 96 - >chr1:4662531-466273 5 TAAATCGT 0.779842 56 + >chr1:4833767-483396 7 TTAATCGT 0.777858 61 + ********** 5) TGTTTAAT (ATTAAACA) 1.874 Matrix: MAT5 TGTTTAAT A 0.1111 0.09112 0.1881 0.1074 0.1057 0.6769 0.7668 0.1993 C 0.02537 0.03582 0.06521 0.08013 0.08927 0.09377 0.03432 0.08804 G 0.07262 0.7214 0.06612 0.05896 0.07036 0.1072 0.116 0.09061 T 0.7909 0.1516 0.6806 0.7536 0.7347 0.1221 0.08288 0.6221 OCCURRENCES: >chr1:6360131-636033 17 TGTTTAAT 1 142 - >chr1:5072821-507302 8 TGTTTAAT 1 149 + >chr1:9942670-994287 46 TGTTTAAA 0.919846 79 - >chr1:6878570-687877 25 TGATTAAT 0.906643 89 - >chr1:4774948-477514 6 TGATTAAT 0.906643 140 + >chr1:9013525-901372 37 TGTTTAAG 0.899248 161 + >chr1:6360131-636033 17 TGTTTAAG 0.899248 6 + >chr1:5805347-580554 10 TGTTTAAC 0.898761 16 - >chr1:9978791-997899 50 TGTTTGAT 0.892015 68 + >chr1:6396504-639670 18 TGTTTGAT 0.892015 10 - >chr1:4562216-456241 4 TGTTTGAT 0.892015 141 + >chr1:6396504-639670 18 TTTTTAAT 0.891988 59 + >chr1:6090845-609104 11 TTTTTAAT 0.891988 170 - >chr1:9460371-946057 38 TGTTTCAT 0.889461 121 - >chr1:9568576-956877 41 TGTTCAAT 0.877642 144 + >chr1:7388801-738900 31 TGTTTAGT 0.876624 88 - >chr1:6719561-671976 22 TGTCTAAT 0.872337 67 + >chr1:6090845-609104 11 TGATTAAA 0.826489 168 + >chr1:7444756-744495 33 TGTTTGAA 0.811861 131 + >chr1:5072821-507302 8 TGTTTGAA 0.811861 156 - >chr1:9932599-993279 45 TGTTTCAA 0.809307 123 + >chr1:8797248-879744 35 TGTTTCAA 0.809307 173 + >chr1:6396504-639670 18 TGTTTCAA 0.809307 179 - >chr1:9932599-993279 45 TGATTAAC 0.805404 44 - >chr1:9013525-901372 37 TGATTAAC 0.805404 173 - >chr1:9574131-957433 42 TGATTTAT 0.801481 144 - >chr1:9568576-956877 41 TGATTTAT 0.801481 23 + >chr1:8797248-879744 35 TGATTTAT 0.801481 8 + >chr1:8851545-885174 36 TGATTGAT 0.798658 119 - >chr1:4833767-483396 7 TGATTGAT 0.798658 129 + >chr1:9948240-994844 47 TGTATAAA 0.797343 126 + >chr1:6205539-620573 13 TGTATAAA 0.797343 163 - >chr1:9932599-993279 45 TGTTTAGA 0.79647 148 + >chr1:4562216-456241 4 TGTTTAGA 0.79647 165 - >chr1:6183701-618390 12 TGATTCAT 0.796104 71 - >chr1:5072821-507302 8 TGATTCAT 0.796104 85 + >chr1:9948240-994844 47 TGTTTATA 0.790191 128 - >chr1:9978791-997899 50 TGATAAAT 0.787394 72 + >chr1:6437830-643803 19 TGAATAAT 0.78414 124 + >chr1:4024990-402519 2 TGATTATT 0.776988 186 + >chr1:6183701-618390 12 TGTATAAC 0.776258 8 - >chr1:6878570-687877 25 TGTTCTAT 0.77248 74 + >chr1:3467418-346761 1 TGTATTAT 0.772335 25 - >chr1:3467418-346761 1 TGTATTAT 0.772335 3 - >chr1:7413722-741392 32 AGTTTAAC 0.769901 187 + >chr1:9574131-957433 42 TGTATGAT 0.769512 119 - >chr1:9568576-956877 41 TGTATAGT 0.754121 107 + >chr1:7444756-744495 33 AGTATAAT 0.748637 69 + >chr1:6090845-609104 11 AGTATAAT 0.748637 93 - >chr1:6721868-672206 23 GGTATAAT 0.741335 124 - ********** 6) ATTACT (AGTAAT) 1.823 Matrix: MAT6 ATTACT A 0.8781 0.0835 0.07038 0.7901 0.03473 0.1075 C 0.04152 0.05455 0.05837 0.03709 0.7755 0.04605 G 0.0322 0.01277 0.1088 0.07223 0.04238 0.01572 T 0.04814 0.8492 0.7624 0.1005 0.1473 0.8308 OCCURRENCES: >chr1:9978791-997899 50 ATTACT 1 31 + >chr1:9568576-956877 41 ATTACT 1 154 - >chr1:9013525-901372 37 ATTACT 1 183 - >chr1:7209035-720923 26 ATTACT 1 183 + >chr1:6878570-687877 25 ATTACT 1 64 - >chr1:6719561-671976 22 ATTACT 1 137 + >chr1:6588721-658892 21 ATTACT 1 9 - >chr1:6472202-647240 20 ATTACT 1 176 - >chr1:6472202-647240 20 ATTACT 1 29 - >chr1:6360131-636033 17 ATTACT 1 86 + >chr1:6262414-626261 14 ATTACT 1 160 + >chr1:6090845-609104 11 ATTACT 1 20 - >chr1:5805347-580554 10 ATTACT 1 176 - >chr1:5072821-507302 8 ATTACT 1 46 + >chr1:4774948-477514 6 ATTACT 1 194 - >chr1:3467418-346761 1 ATTACT 1 32 + >chr1:9962925-996312 49 ATTATT 0.866209 188 - >chr1:9962925-996312 49 ATTATT 0.866209 133 + >chr1:9942670-994287 46 ATTATT 0.866209 73 + >chr1:8797248-879744 35 ATTATT 0.866209 192 + >chr1:6878570-687877 25 ATTATT 0.866209 41 - >chr1:6719561-671976 22 ATTATT 0.866209 181 - >chr1:6719561-671976 22 ATTATT 0.866209 145 - >chr1:6472202-647240 20 ATTATT 0.866209 5 + >chr1:6437830-643803 19 ATTATT 0.866209 126 - >chr1:6396504-639670 18 ATTATT 0.866209 55 + >chr1:6090845-609104 11 ATTATT 0.866209 84 + >chr1:6090845-609104 11 ATTATT 0.866209 43 + >chr1:5805347-580554 10 ATTATT 0.866209 65 - >chr1:4024990-402519 2 ATTATT 0.866209 188 + >chr1:3467418-346761 1 ATTATT 0.866209 24 - >chr1:9942670-994287 46 ATGACT 0.860789 34 + >chr1:9932599-993279 45 ATGACT 0.860789 14 - >chr1:9574131-957433 42 ATGACT 0.860789 55 + >chr1:9013525-901372 37 ATGACT 0.860789 193 + >chr1:7768736-776893 34 ATGACT 0.860789 121 - >chr1:7444756-744495 33 ATGACT 0.860789 194 - >chr1:7444756-744495 33 ATGACT 0.860789 40 - >chr1:7303541-730374 27 ATGACT 0.860789 111 + >chr1:6472202-647240 20 ATGACT 0.860789 143 - >chr1:6183701-618390 12 ATGACT 0.860789 175 - >chr1:4662531-466273 5 ATGACT 0.860789 126 + >chr1:6878570-687877 25 ATTACA 0.845949 38 - >chr1:6719561-671976 22 ATTACA 0.845949 127 + >chr1:6588721-658892 21 ATTACA 0.845949 140 - >chr1:6090845-609104 11 ATTACA 0.845949 89 - >chr1:5805347-580554 10 ATTACA 0.845949 147 + >chr1:5805347-580554 10 ATTACA 0.845949 125 + >chr1:4833767-483396 7 ATTACA 0.845949 107 - >chr1:4774948-477514 6 ATTACA 0.845949 9 - ********** 7) TCACAT (ATGTGA) 1.8 Matrix: MAT7 TCACAT A 0.08233 0.1013 0.9032 0.139 0.8283 0.0876 C 0.04274 0.7009 0.02867 0.7396 0.0355 0.04803 G 0.04677 0.1109 0.01307 0.0554 0.0163 0.05845 T 0.8282 0.08693 0.05509 0.06599 0.1199 0.8059 OCCURRENCES: >chr1:9956513-995671 48 TCACAT 1 18 + >chr1:9813405-981360 44 TCACAT 1 66 - >chr1:9568576-956877 41 TCACAT 1 33 + >chr1:8797248-879744 35 TCACAT 1 32 + >chr1:7303541-730374 27 TCACAT 1 80 + >chr1:7209035-720923 26 TCACAT 1 127 - >chr1:6878570-687877 25 TCACAT 1 101 + >chr1:6878570-687877 25 TCACAT 1 51 - >chr1:6588721-658892 21 TCACAT 1 22 - >chr1:6472202-647240 20 TCACAT 1 74 - >chr1:6277750-627795 16 TCACAT 1 31 + >chr1:6266967-626716 15 TCACAT 1 171 + >chr1:6205539-620573 13 TCACAT 1 33 - >chr1:5805347-580554 10 TCACAT 1 131 - >chr1:4774948-477514 6 TCACAT 1 132 - >chr1:4774948-477514 6 TCACAT 1 19 + >chr1:4662531-466273 5 TCACAT 1 31 - >chr1:4402453-440265 3 TCACAT 1 135 + >chr1:4024990-402519 2 TCACAT 1 66 - >chr1:3467418-346761 1 TCACAT 1 79 + >chr1:3467418-346761 1 TCACAT 1 53 + >chr1:9978791-997899 50 TGACAT 0.870153 84 - >chr1:9942670-994287 46 TGACAT 0.870153 93 + >chr1:9574131-957433 42 TGACAT 0.870153 111 + >chr1:9554705-955490 40 TGACAT 0.870153 53 - >chr1:7303541-730374 27 TGACAT 0.870153 99 + >chr1:7209035-720923 26 TGACAT 0.870153 121 - >chr1:6878570-687877 25 TGACAT 0.870153 69 + >chr1:6437830-643803 19 TGACAT 0.870153 6 - >chr1:6183701-618390 12 TGACAT 0.870153 140 + >chr1:4833767-483396 7 TGACAT 0.870153 29 - >chr1:9956513-995671 48 TAACAT 0.868041 137 + >chr1:9574131-957433 42 TAACAT 0.868041 104 - >chr1:9554705-955490 40 TAACAT 0.868041 47 - >chr1:8851545-885174 36 TAACAT 0.868041 100 - >chr1:8797248-879744 35 TAACAT 0.868041 103 + >chr1:7768736-776893 34 TAACAT 0.868041 80 - >chr1:6090845-609104 11 TAACAT 0.868041 154 + >chr1:9962925-996312 49 TCAAAT 0.867804 40 - >chr1:9932599-993279 45 TCAAAT 0.867804 176 + >chr1:9813405-981360 44 TCAAAT 0.867804 55 + >chr1:8851545-885174 36 TCAAAT 0.867804 188 - >chr1:8851545-885174 36 TCAAAT 0.867804 184 + >chr1:8851545-885174 36 TCAAAT 0.867804 96 + >chr1:6719561-671976 22 TCAAAT 0.867804 142 + >chr1:5805347-580554 10 TCAAAT 0.867804 180 - >chr1:5805347-580554 10 TCAAAT 0.867804 121 + >chr1:4833767-483396 7 TCAAAT 0.867804 126 - >chr1:4833767-483396 7 TCAAAT 0.867804 25 + >chr1:4774948-477514 6 TTACAT 0.864876 8 - ********** 8) TACATT (AATGTA) 1.773 Matrix: MAT8 TACATT A 0.09867 0.7322 0.1194 0.8806 0.101 0.09423 C 0.1068 0.06715 0.743 0.03825 0.03645 0.02894 G 0.1046 0.07625 0.0467 0.01049 0.07555 0.07099 T 0.6899 0.1244 0.09086 0.07061 0.7871 0.8058 OCCURRENCES: >chr1:9962925-996312 49 TACATT 1 130 + >chr1:9942670-994287 46 TACATT 1 158 + >chr1:9932599-993279 45 TACATT 1 105 - >chr1:9460371-946057 38 TACATT 1 173 + >chr1:9013525-901372 37 TACATT 1 59 + >chr1:6721868-672206 23 TACATT 1 46 + >chr1:6588721-658892 21 TACATT 1 160 - >chr1:6472202-647240 20 TACATT 1 92 - >chr1:6396504-639670 18 TACATT 1 64 - >chr1:6205539-620573 13 TACATT 1 167 + >chr1:4024990-402519 2 TACATT 1 121 - >chr1:3467418-346761 1 TACATT 1 29 + >chr1:4662531-466273 5 CACATT 0.865945 30 - >chr1:4024990-402519 2 CACATT 0.865945 65 - >chr1:3467418-346761 1 CACATT 0.865945 54 + >chr1:9942670-994287 46 GACATT 0.865452 94 + >chr1:9554705-955490 40 GACATT 0.865452 52 - >chr1:7388801-738900 31 GACATT 0.865452 176 - >chr1:7303541-730374 27 GACATT 0.865452 100 + >chr1:6437830-643803 19 GACATT 0.865452 84 - >chr1:6437830-643803 19 GACATT 0.865452 5 - >chr1:6205539-620573 13 GACATT 0.865452 114 + >chr1:6183701-618390 12 GACATT 0.865452 83 + >chr1:4833767-483396 7 GACATT 0.865452 28 - >chr1:4562216-456241 4 GACATT 0.865452 157 + >chr1:9978791-997899 50 TAAATT 0.856652 28 + >chr1:9962925-996312 49 TAAATT 0.856652 191 - >chr1:9948240-994844 47 TAAATT 0.856652 17 - >chr1:9942670-994287 46 TAAATT 0.856652 131 - >chr1:9813405-981360 44 TAAATT 0.856652 144 + >chr1:7768736-776893 34 TAAATT 0.856652 105 + >chr1:6205539-620573 13 TAAATT 0.856652 161 - >chr1:6090845-609104 11 TAAATT 0.856652 123 - >chr1:4774948-477514 6 TAAATT 0.856652 73 + >chr1:9956513-995671 48 TATATT 0.85009 155 + >chr1:9942670-994287 46 TATATT 0.85009 119 + >chr1:9813405-981360 44 TATATT 0.85009 31 - >chr1:9013525-901372 37 TATATT 0.85009 78 - >chr1:7768736-776893 34 TATATT 0.85009 2 - >chr1:7413722-741392 32 TATATT 0.85009 87 + >chr1:7413722-741392 32 TATATT 0.85009 85 - >chr1:6472202-647240 20 TATATT 0.85009 2 + >chr1:6360131-636033 17 TATATT 0.85009 26 - >chr1:9813405-981360 44 TACAAT 0.842287 28 + >chr1:9535189-953538 39 TACAAT 0.842287 43 + >chr1:7386917-738711 29 TACAAT 0.842287 47 + >chr1:6878570-687877 25 TACAAT 0.842287 36 - >chr1:6090845-609104 11 TACAAT 0.842287 87 - >chr1:5805347-580554 10 TACAAT 0.842287 127 + >chr1:4774948-477514 6 TACAAT 0.842287 120 - ********** 9) TTGACA (TGTCAA) 1.733 Matrix: MAT9 TTGACA A 0.1287 0.06713 0.09732 0.8048 0.1278 0.8784 C 0.07599 0.01615 0.136 0.02754 0.7339 0.02517 G 0.07764 0.03641 0.6902 0.03821 0.05137 0.01588 T 0.7176 0.8803 0.0764 0.1295 0.08697 0.0806 OCCURRENCES: >chr1:9942670-994287 46 TTGACA 1 92 + >chr1:8851545-885174 36 TTGACA 1 190 + >chr1:8797248-879744 35 TTGACA 1 125 - >chr1:7768736-776893 34 TTGACA 1 75 - >chr1:7444756-744495 33 TTGACA 1 9 - >chr1:7209035-720923 26 TTGACA 1 122 - >chr1:6437830-643803 19 TTGACA 1 7 - >chr1:6205539-620573 13 TTGACA 1 136 + >chr1:6090845-609104 11 TTGACA 1 181 + >chr1:5805347-580554 10 TTGACA 1 119 - >chr1:4833767-483396 7 TTGACA 1 30 - >chr1:4024990-402519 2 TTGACA 1 21 + >chr1:6719561-671976 22 TTCACA 0.875237 86 - >chr1:6437830-643803 19 TTCACA 0.875237 122 - >chr1:6277750-627795 16 TTCACA 0.875237 30 + >chr1:6266967-626716 15 TTCACA 0.875237 170 + >chr1:6262414-626261 14 TTCACA 0.875237 59 + >chr1:6090845-609104 11 TTCACA 0.875237 30 + >chr1:5805347-580554 10 TTCACA 0.875237 132 - >chr1:5805347-580554 10 TTCACA 0.875237 43 + >chr1:5168670-516887 9 TTCACA 0.875237 155 + >chr1:5168670-516887 9 TTCACA 0.875237 24 - >chr1:4774948-477514 6 TTCACA 0.875237 133 - >chr1:4402453-440265 3 TTCACA 0.875237 134 + >chr1:9978791-997899 50 ATGACA 0.867422 85 - >chr1:9956513-995671 48 ATGACA 0.867422 106 + >chr1:9932599-993279 45 ATGACA 0.867422 140 + >chr1:9574131-957433 42 ATGACA 0.867422 179 - >chr1:9574131-957433 42 ATGACA 0.867422 110 + >chr1:7768736-776893 34 ATGACA 0.867422 139 + >chr1:6878570-687877 25 ATGACA 0.867422 68 + >chr1:6360131-636033 17 ATGACA 0.867422 149 + >chr1:6262414-626261 14 ATGACA 0.867422 102 - >chr1:6183701-618390 12 ATGACA 0.867422 108 - >chr1:6183701-618390 12 ATGACA 0.867422 42 + >chr1:6090845-609104 11 ATGACA 0.867422 146 - >chr1:9962925-996312 49 TTAACA 0.866518 121 + >chr1:9932599-993279 45 TTAACA 0.866518 43 - >chr1:9574131-957433 42 TTAACA 0.866518 105 - >chr1:9554705-955490 40 TTAACA 0.866518 48 - >chr1:8851545-885174 36 TTAACA 0.866518 101 - >chr1:6266967-626716 15 TTAACA 0.866518 42 - >chr1:6090845-609104 11 TTAACA 0.866518 153 + >chr1:4024990-402519 2 TTAACA 0.866518 79 - >chr1:9978791-997899 50 TTGATA 0.854356 71 + >chr1:9568576-956877 41 TTGATA 0.854356 190 - >chr1:9460371-946057 38 TTGATA 0.854356 85 - >chr1:6588721-658892 21 TTGATA 0.854356 146 - >chr1:6205539-620573 13 TTGATA 0.854356 96 + >chr1:4833767-483396 7 TTGATA 0.854356 23 - ********** 10) AATAAT (ATTATT) 1.714 Matrix: MAT10 AATAAT A 0.821 0.7797 0.1145 0.7009 0.8508 0.1043 C 0.05975 0.04103 0.05818 0.09164 0.07329 0.07718 G 0.05042 0.1458 0.06827 0.08449 0.04593 0.05097 T 0.06887 0.03344 0.759 0.1229 0.02993 0.7675 OCCURRENCES: >chr1:9962925-996312 49 AATAAT 1 188 + >chr1:9962925-996312 49 AATAAT 1 133 - >chr1:9942670-994287 46 AATAAT 1 73 - >chr1:8797248-879744 35 AATAAT 1 192 - >chr1:6878570-687877 25 AATAAT 1 41 + >chr1:6719561-671976 22 AATAAT 1 181 + >chr1:6719561-671976 22 AATAAT 1 145 + >chr1:6472202-647240 20 AATAAT 1 5 - >chr1:6437830-643803 19 AATAAT 1 126 + >chr1:6396504-639670 18 AATAAT 1 55 - >chr1:6090845-609104 11 AATAAT 1 84 - >chr1:6090845-609104 11 AATAAT 1 43 - >chr1:5805347-580554 10 AATAAT 1 65 + >chr1:4024990-402519 2 AATAAT 1 188 - >chr1:3467418-346761 1 AATAAT 1 24 + >chr1:9962925-996312 49 AATTAT 0.867789 189 - >chr1:8797248-879744 35 AATTAT 0.867789 179 + >chr1:7768736-776893 34 AATTAT 0.867789 107 + >chr1:6719561-671976 22 AATTAT 0.867789 182 - >chr1:6719561-671976 22 AATTAT 0.867789 146 - >chr1:6588721-658892 21 AATTAT 0.867789 143 + >chr1:6437830-643803 19 AATTAT 0.867789 127 - >chr1:6396504-639670 18 AATTAT 0.867789 54 + >chr1:6266967-626716 15 AATTAT 0.867789 18 + >chr1:6090845-609104 11 AATTAT 0.867789 92 + >chr1:6090845-609104 11 AATTAT 0.867789 83 + >chr1:5805347-580554 10 AATTAT 0.867789 66 - >chr1:8851545-885174 36 AATCAT 0.860628 122 + >chr1:8797248-879744 35 AATCAT 0.860628 138 - >chr1:7444756-744495 33 AATCAT 0.860628 13 + >chr1:6090845-609104 11 AATCAT 0.860628 167 - >chr1:5168670-516887 9 AATCAT 0.860628 31 - >chr1:5072821-507302 8 AATCAT 0.860628 84 - >chr1:4774948-477514 6 AATCAT 0.860628 139 - >chr1:9978791-997899 50 AGTAAT 0.854996 31 - >chr1:9568576-956877 41 AGTAAT 0.854996 154 + >chr1:9013525-901372 37 AGTAAT 0.854996 183 + >chr1:7209035-720923 26 AGTAAT 0.854996 183 - >chr1:6878570-687877 25 AGTAAT 0.854996 64 + >chr1:6719561-671976 22 AGTAAT 0.854996 137 - >chr1:6588721-658892 21 AGTAAT 0.854996 9 + >chr1:6472202-647240 20 AGTAAT 0.854996 176 + >chr1:6472202-647240 20 AGTAAT 0.854996 29 + >chr1:6360131-636033 17 AGTAAT 0.854996 86 - >chr1:6262414-626261 14 AGTAAT 0.854996 160 - >chr1:6090845-609104 11 AGTAAT 0.854996 20 + >chr1:5805347-580554 10 AGTAAT 0.854996 176 + >chr1:5072821-507302 8 AGTAAT 0.854996 46 - >chr1:4774948-477514 6 AGTAAT 0.854996 194 + >chr1:3467418-346761 1 AGTAAT 0.854996 32 - ********** 11) ATGACT (AGTCAT) 1.702 Matrix: MAT11 ATGACT A 0.7923 0.07691 0.08105 0.8363 0.111 0.123 C 0.07045 0.02479 0.07396 0.02863 0.7081 0.04261 G 0.06487 0.02256 0.6694 0.03558 0.06369 0.01484 T 0.07241 0.8757 0.1756 0.0995 0.1172 0.8196 OCCURRENCES: >chr1:9942670-994287 46 ATGACT 1 34 + >chr1:9932599-993279 45 ATGACT 1 14 - >chr1:9574131-957433 42 ATGACT 1 55 + >chr1:9013525-901372 37 ATGACT 1 193 + >chr1:7768736-776893 34 ATGACT 1 121 - >chr1:7444756-744495 33 ATGACT 1 194 - >chr1:7444756-744495 33 ATGACT 1 40 - >chr1:7303541-730374 27 ATGACT 1 111 + >chr1:6472202-647240 20 ATGACT 1 143 - >chr1:6183701-618390 12 ATGACT 1 175 - >chr1:4662531-466273 5 ATGACT 1 126 + >chr1:9978791-997899 50 ATTACT 0.888601 31 + >chr1:9568576-956877 41 ATTACT 0.888601 154 - >chr1:9013525-901372 37 ATTACT 0.888601 183 - >chr1:7209035-720923 26 ATTACT 0.888601 183 + >chr1:6878570-687877 25 ATTACT 0.888601 64 - >chr1:6719561-671976 22 ATTACT 0.888601 137 + >chr1:6588721-658892 21 ATTACT 0.888601 9 - >chr1:6472202-647240 20 ATTACT 0.888601 176 - >chr1:6472202-647240 20 ATTACT 0.888601 29 - >chr1:6360131-636033 17 ATTACT 0.888601 86 + >chr1:6262414-626261 14 ATTACT 0.888601 160 + >chr1:6090845-609104 11 ATTACT 0.888601 20 - >chr1:5805347-580554 10 ATTACT 0.888601 176 - >chr1:5072821-507302 8 ATTACT 0.888601 46 + >chr1:4774948-477514 6 ATTACT 0.888601 194 - >chr1:3467418-346761 1 ATTACT 0.888601 32 + >chr1:8797248-879744 35 ATAACT 0.867272 132 + >chr1:7209035-720923 26 ATAACT 0.867272 79 + >chr1:6360131-636033 17 ATAACT 0.867272 111 - >chr1:6262414-626261 14 ATAACT 0.867272 139 - >chr1:6183701-618390 12 ATAACT 0.867272 7 - >chr1:5072821-507302 8 ATAACT 0.867272 25 + >chr1:9956513-995671 48 ATGATT 0.866692 35 - >chr1:9013525-901372 37 ATGATT 0.866692 176 - >chr1:8851545-885174 36 ATGATT 0.866692 122 - >chr1:8797248-879744 35 ATGATT 0.866692 138 + >chr1:7444756-744495 33 ATGATT 0.866692 13 - >chr1:6090845-609104 11 ATGATT 0.866692 167 + >chr1:5168670-516887 9 ATGATT 0.866692 31 + >chr1:5072821-507302 8 ATGATT 0.866692 84 + >chr1:4774948-477514 6 ATGATT 0.866692 139 + >chr1:8851545-885174 36 ATGAAT 0.865302 86 - >chr1:7303541-730374 27 ATGAAT 0.865302 171 - >chr1:7303541-730374 27 ATGAAT 0.865302 107 + >chr1:6437830-643803 19 ATGAAT 0.865302 130 - >chr1:6183701-618390 12 ATGAAT 0.865302 71 + >chr1:5072821-507302 8 ATGAAT 0.865302 127 + >chr1:5072821-507302 8 ATGAAT 0.865302 87 - >chr1:5072821-507302 8 ATGAAT 0.865302 21 + ********** 12) TTGAAA (TTTCAA) 1.693 Matrix: MAT12 TTGAAA A 0.08972 0.0524 0.2142 0.8734 0.7765 0.8008 C 0.08565 0.01703 0.08046 0.009563 0.09992 0.05955 G 0.07526 0.08263 0.6446 0.04169 0.04608 0.03337 T 0.7494 0.8479 0.06075 0.07533 0.07746 0.1063 OCCURRENCES: >chr1:9956513-995671 48 TTGAAA 1 180 + >chr1:9948240-994844 47 TTGAAA 1 112 + >chr1:9932599-993279 45 TTGAAA 1 125 - >chr1:8797248-879744 35 TTGAAA 1 175 - >chr1:7444756-744495 33 TTGAAA 1 161 - >chr1:7388025-738822 30 TTGAAA 1 2 - >chr1:7309743-730994 28 TTGAAA 1 146 - >chr1:7209035-720923 26 TTGAAA 1 54 - >chr1:6750817-675101 24 TTGAAA 1 153 + >chr1:6588721-658892 21 TTGAAA 1 101 + >chr1:6396504-639670 18 TTGAAA 1 179 + >chr1:6266967-626716 15 TTGAAA 1 176 - >chr1:6090845-609104 11 TTGAAA 1 102 + >chr1:4562216-456241 4 TTGAAA 1 148 - >chr1:3467418-346761 1 TTGAAA 1 190 + >chr1:6205539-620573 13 TTAAAA 0.903286 157 + >chr1:6205539-620573 13 TTAAAA 0.903286 28 + >chr1:6090845-609104 11 TTAAAA 0.903286 171 + >chr1:6090845-609104 11 TTAAAA 0.903286 151 - >chr1:5072821-507302 8 TTAAAA 0.903286 114 + >chr1:4024990-402519 2 TTAAAA 0.903286 81 + >chr1:3467418-346761 1 TTAAAA 0.903286 184 - >chr1:9942670-994287 46 TTGACA 0.847972 92 + >chr1:8851545-885174 36 TTGACA 0.847972 190 + >chr1:8797248-879744 35 TTGACA 0.847972 125 - >chr1:7768736-776893 34 TTGACA 0.847972 75 - >chr1:7444756-744495 33 TTGACA 0.847972 9 - >chr1:7209035-720923 26 TTGACA 0.847972 122 - >chr1:6437830-643803 19 TTGACA 0.847972 7 - >chr1:6205539-620573 13 TTGACA 0.847972 136 + >chr1:6090845-609104 11 TTGACA 0.847972 181 + >chr1:5805347-580554 10 TTGACA 0.847972 119 - >chr1:4833767-483396 7 TTGACA 0.847972 30 - >chr1:4024990-402519 2 TTGACA 0.847972 21 + >chr1:9942670-994287 46 TTGAAT 0.843956 162 + >chr1:7444756-744495 33 TTGAAT 0.843956 134 + >chr1:7413722-741392 32 TTGAAT 0.843956 123 - >chr1:6721868-672206 23 TTGAAT 0.843956 85 + >chr1:6277750-627795 16 TTGAAT 0.843956 35 - >chr1:6277750-627795 16 TTGAAT 0.843956 25 + >chr1:6183701-618390 12 TTGAAT 0.843956 87 + >chr1:6090845-609104 11 TTGAAT 0.843956 119 - >chr1:6090845-609104 11 TTGAAT 0.843956 115 + >chr1:5072821-507302 8 TTGAAT 0.843956 155 - >chr1:9978791-997899 50 TTGATA 0.842925 71 + >chr1:9568576-956877 41 TTGATA 0.842925 190 - >chr1:9460371-946057 38 TTGATA 0.842925 85 - >chr1:6588721-658892 21 TTGATA 0.842925 146 - >chr1:6205539-620573 13 TTGATA 0.842925 96 + >chr1:4833767-483396 7 TTGATA 0.842925 23 - ********** 13) ATTTTA (TAAAAT) 1.691 Matrix: MAT13 ATTTTA A 0.7686 0.09324 0.05315 0.07052 0.1079 0.7442 C 0.05296 0.05566 0.02564 0.04286 0.09559 0.0825 G 0.06642 0.0539 0.07598 0.07754 0.08916 0.06427 T 0.112 0.7972 0.8452 0.8091 0.7073 0.1091 OCCURRENCES: >chr1:9956513-995671 48 ATTTTA 1 185 + >chr1:9942670-994287 46 ATTTTA 1 135 - >chr1:9813405-981360 44 ATTTTA 1 132 - >chr1:9013525-901372 37 ATTTTA 1 135 - >chr1:9013525-901372 37 ATTTTA 1 113 - >chr1:8851545-885174 36 ATTTTA 1 104 - >chr1:8797248-879744 35 ATTTTA 1 147 - >chr1:7768736-776893 34 ATTTTA 1 135 - >chr1:7413722-741392 32 ATTTTA 1 11 + >chr1:7388801-738900 31 ATTTTA 1 63 + >chr1:7386917-738711 29 ATTTTA 1 31 - >chr1:6472202-647240 20 ATTTTA 1 33 + >chr1:6266967-626716 15 ATTTTA 1 3 - >chr1:6262414-626261 14 ATTTTA 1 184 + >chr1:6205539-620573 13 ATTTTA 1 158 - >chr1:6205539-620573 13 ATTTTA 1 29 - >chr1:6090845-609104 11 ATTTTA 1 150 + >chr1:5805347-580554 10 ATTTTA 1 155 + >chr1:5072821-507302 8 ATTTTA 1 115 - >chr1:4833767-483396 7 ATTTTA 1 122 - >chr1:4024990-402519 2 ATTTTA 1 118 - >chr1:3467418-346761 1 ATTTTA 1 183 + >chr1:3467418-346761 1 ATTTTA 1 134 + >chr1:8851545-885174 36 ATTTGA 0.857659 188 + >chr1:8851545-885174 36 ATTTGA 0.857659 184 - >chr1:8851545-885174 36 ATTTGA 0.857659 96 - >chr1:6719561-671976 22 ATTTGA 0.857659 142 - >chr1:5805347-580554 10 ATTTGA 0.857659 180 + >chr1:5805347-580554 10 ATTTGA 0.857659 121 - >chr1:4833767-483396 7 ATTTGA 0.857659 126 + >chr1:4833767-483396 7 ATTTGA 0.857659 25 - >chr1:9813405-981360 44 ATTGTA 0.83155 28 - >chr1:9535189-953538 39 ATTGTA 0.83155 43 - >chr1:7386917-738711 29 ATTGTA 0.83155 47 - >chr1:6878570-687877 25 ATTGTA 0.83155 36 + >chr1:6090845-609104 11 ATTGTA 0.83155 87 + >chr1:5805347-580554 10 ATTGTA 0.83155 127 - >chr1:4774948-477514 6 ATTGTA 0.83155 120 + >chr1:9948240-994844 47 ATTATA 0.829934 57 - >chr1:7444756-744495 33 ATTATA 0.829934 71 - >chr1:6721868-672206 23 ATTATA 0.829934 124 + >chr1:6266967-626716 15 ATTATA 0.829934 19 + >chr1:6090845-609104 11 ATTATA 0.829934 93 + >chr1:9956513-995671 48 ATGTTA 0.822869 137 - >chr1:9574131-957433 42 ATGTTA 0.822869 104 + >chr1:9554705-955490 40 ATGTTA 0.822869 47 + >chr1:8851545-885174 36 ATGTTA 0.822869 100 + >chr1:8797248-879744 35 ATGTTA 0.822869 103 - >chr1:7768736-776893 34 ATGTTA 0.822869 80 + >chr1:6090845-609104 11 ATGTTA 0.822869 154 - ********** 14) TAAACA (TGTTTA) 1.685 Matrix: MAT14 TAAACA A 0.1209 0.7643 0.8407 0.816 0.1373 0.8505 C 0.06995 0.06399 0.03895 0.04513 0.685 0.05353 G 0.09693 0.07741 0.05489 0.04938 0.08995 0.02176 T 0.7122 0.09432 0.06543 0.08946 0.08774 0.07422 OCCURRENCES: >chr1:9948240-994844 47 TAAACA 1 130 + >chr1:9942670-994287 46 TAAACA 1 81 + >chr1:9932599-993279 45 TAAACA 1 148 - >chr1:9574131-957433 42 TAAACA 1 5 + >chr1:9013525-901372 37 TAAACA 1 161 - >chr1:7768736-776893 34 TAAACA 1 169 + >chr1:7388801-738900 31 TAAACA 1 90 + >chr1:6472202-647240 20 TAAACA 1 12 - >chr1:6360131-636033 17 TAAACA 1 144 + >chr1:6360131-636033 17 TAAACA 1 6 - >chr1:5805347-580554 10 TAAACA 1 18 + >chr1:5072821-507302 8 TAAACA 1 149 - >chr1:5072821-507302 8 TAAACA 1 15 + >chr1:4562216-456241 4 TAAACA 1 167 + >chr1:7209035-720923 26 TAAAGA 0.862934 168 + >chr1:6721868-672206 23 TAAAGA 0.862934 96 - >chr1:6588721-658892 21 TAAAGA 0.862934 84 - >chr1:6437830-643803 19 TAAAGA 0.862934 173 - >chr1:6396504-639670 18 TAAAGA 0.862934 5 + >chr1:6205539-620573 13 TAAAGA 0.862934 190 + >chr1:6205539-620573 13 TAAAGA 0.862934 25 - >chr1:4024990-402519 2 TAAAGA 0.862934 36 + >chr1:9962925-996312 49 TTAACA 0.845673 121 + >chr1:9932599-993279 45 TTAACA 0.845673 43 - >chr1:9574131-957433 42 TTAACA 0.845673 105 - >chr1:9554705-955490 40 TTAACA 0.845673 48 - >chr1:8851545-885174 36 TTAACA 0.845673 101 - >chr1:6266967-626716 15 TTAACA 0.845673 42 - >chr1:6090845-609104 11 TTAACA 0.845673 153 + >chr1:4024990-402519 2 TTAACA 0.845673 79 - >chr1:9956513-995671 48 TCAACA 0.838688 85 + >chr1:9568576-956877 41 TCAACA 0.838688 88 - >chr1:8797248-879744 35 TCAACA 0.838688 127 + >chr1:6878570-687877 25 TCAACA 0.838688 2 - >chr1:6262414-626261 14 TCAACA 0.838688 130 - >chr1:6205539-620573 13 TCAACA 0.838688 134 - >chr1:6183701-618390 12 TCAACA 0.838688 54 - >chr1:9932599-993279 45 TAATCA 0.832635 46 + >chr1:9013525-901372 37 TAATCA 0.832635 175 + >chr1:6878570-687877 25 TAATCA 0.832635 91 + >chr1:6090845-609104 11 TAATCA 0.832635 168 - >chr1:4774948-477514 6 TAATCA 0.832635 140 - >chr1:4024990-402519 2 TAATCA 0.832635 186 - >chr1:3467418-346761 1 TAATCA 0.832635 50 + >chr1:9956513-995671 48 TATACA 0.821406 153 - >chr1:9948240-994844 47 TATACA 0.821406 126 - >chr1:9568576-956877 41 TATACA 0.821406 107 - >chr1:6437830-643803 19 TATACA 0.821406 105 + >chr1:6205539-620573 13 TATACA 0.821406 165 + >chr1:6183701-618390 12 TATACA 0.821406 10 + ********** 15) ATGATT (AATCAT) 1.678 Matrix: MAT15 ATGATT A 0.7798 0.03895 0.1394 0.8016 0.09996 0.05479 C 0.04628 0.04674 0.09287 0.04385 0.1069 0.06237 G 0.07995 0.03341 0.6306 0.0422 0.05873 0.09202 T 0.09401 0.8809 0.1371 0.1123 0.7344 0.7908 OCCURRENCES: >chr1:9956513-995671 48 ATGATT 1 35 - >chr1:9013525-901372 37 ATGATT 1 176 - >chr1:8851545-885174 36 ATGATT 1 122 - >chr1:8797248-879744 35 ATGATT 1 138 + >chr1:7444756-744495 33 ATGATT 1 13 - >chr1:6090845-609104 11 ATGATT 1 167 + >chr1:5168670-516887 9 ATGATT 1 31 + >chr1:5072821-507302 8 ATGATT 1 84 + >chr1:4774948-477514 6 ATGATT 1 139 + >chr1:9962925-996312 49 ATAATT 0.885497 189 + >chr1:8797248-879744 35 ATAATT 0.885497 179 - >chr1:7768736-776893 34 ATAATT 0.885497 107 - >chr1:6719561-671976 22 ATAATT 0.885497 182 + >chr1:6719561-671976 22 ATAATT 0.885497 146 + >chr1:6588721-658892 21 ATAATT 0.885497 143 - >chr1:6437830-643803 19 ATAATT 0.885497 127 + >chr1:6396504-639670 18 ATAATT 0.885497 54 - >chr1:6266967-626716 15 ATAATT 0.885497 18 - >chr1:6090845-609104 11 ATAATT 0.885497 92 - >chr1:6090845-609104 11 ATAATT 0.885497 83 - >chr1:5805347-580554 10 ATAATT 0.885497 66 + >chr1:9962925-996312 49 ATTATT 0.884969 188 - >chr1:9962925-996312 49 ATTATT 0.884969 133 + >chr1:9942670-994287 46 ATTATT 0.884969 73 + >chr1:8797248-879744 35 ATTATT 0.884969 192 + >chr1:6878570-687877 25 ATTATT 0.884969 41 - >chr1:6719561-671976 22 ATTATT 0.884969 181 - >chr1:6719561-671976 22 ATTATT 0.884969 145 - >chr1:6472202-647240 20 ATTATT 0.884969 5 + >chr1:6437830-643803 19 ATTATT 0.884969 126 - >chr1:6396504-639670 18 ATTATT 0.884969 55 + >chr1:6090845-609104 11 ATTATT 0.884969 84 + >chr1:6090845-609104 11 ATTATT 0.884969 43 + >chr1:5805347-580554 10 ATTATT 0.884969 65 - >chr1:4024990-402519 2 ATTATT 0.884969 188 + >chr1:3467418-346761 1 ATTATT 0.884969 24 - >chr1:9978791-997899 50 ATCATT 0.874651 77 - >chr1:9932599-993279 45 ATCATT 0.874651 18 + >chr1:9013525-901372 37 ATCATT 0.874651 40 - >chr1:7444756-744495 33 ATCATT 0.874651 104 - >chr1:6277750-627795 16 ATCATT 0.874651 98 + >chr1:6205539-620573 13 ATCATT 0.874651 38 + >chr1:5168670-516887 9 ATCATT 0.874651 30 - >chr1:4774948-477514 6 ATCATT 0.874651 138 - >chr1:6472202-647240 20 ATGACT 0.853739 143 - >chr1:6183701-618390 12 ATGACT 0.853739 175 - >chr1:4662531-466273 5 ATGACT 0.853739 126 + >chr1:9942670-994287 46 ACGATT 0.805545 105 - >chr1:4833767-483396 7 ACGATT 0.805545 63 - >chr1:4662531-466273 5 ACGATT 0.805545 58 - ********** 16) AGTATT (AATACT) 1.664 Matrix: MAT16 AGTATT A 0.8169 0.03667 0.1017 0.7024 0.1984 0.05968 C 0.01586 0.0534 0.06469 0.08485 0.01561 0.04079 G 0.03184 0.739 0.03857 0.072 0.06428 0.04865 T 0.1354 0.1709 0.7951 0.1407 0.7217 0.8509 OCCURRENCES: >chr1:9574131-957433 42 AGTATT 1 164 - >chr1:8851545-885174 36 AGTATT 1 143 - >chr1:7444756-744495 33 AGTATT 1 137 - >chr1:7388801-738900 31 AGTATT 1 75 - >chr1:7209035-720923 26 AGTATT 1 10 - >chr1:6262414-626261 14 AGTATT 1 181 + >chr1:5805347-580554 10 AGTATT 1 152 + >chr1:4833767-483396 7 AGTATT 1 18 + >chr1:4402453-440265 3 AGTATT 1 177 + >chr1:9978791-997899 50 AGTAAT 0.881262 31 - >chr1:9568576-956877 41 AGTAAT 0.881262 154 + >chr1:9013525-901372 37 AGTAAT 0.881262 183 + >chr1:7209035-720923 26 AGTAAT 0.881262 183 - >chr1:6878570-687877 25 AGTAAT 0.881262 64 + >chr1:6719561-671976 22 AGTAAT 0.881262 137 - >chr1:6588721-658892 21 AGTAAT 0.881262 9 + >chr1:6472202-647240 20 AGTAAT 0.881262 176 + >chr1:6472202-647240 20 AGTAAT 0.881262 29 + >chr1:6360131-636033 17 AGTAAT 0.881262 86 - >chr1:6262414-626261 14 AGTAAT 0.881262 160 - >chr1:6090845-609104 11 AGTAAT 0.881262 20 + >chr1:5805347-580554 10 AGTAAT 0.881262 176 + >chr1:5072821-507302 8 AGTAAT 0.881262 46 - >chr1:4774948-477514 6 AGTAAT 0.881262 194 + >chr1:3467418-346761 1 AGTAAT 0.881262 32 - >chr1:9962925-996312 49 ATTATT 0.871068 188 - >chr1:9962925-996312 49 ATTATT 0.871068 133 + >chr1:9942670-994287 46 ATTATT 0.871068 73 + >chr1:8797248-879744 35 ATTATT 0.871068 192 + >chr1:6878570-687877 25 ATTATT 0.871068 41 - >chr1:6719561-671976 22 ATTATT 0.871068 181 - >chr1:6719561-671976 22 ATTATT 0.871068 145 - >chr1:6472202-647240 20 ATTATT 0.871068 5 + >chr1:6437830-643803 19 ATTATT 0.871068 126 - >chr1:6396504-639670 18 ATTATT 0.871068 55 + >chr1:6090845-609104 11 ATTATT 0.871068 84 + >chr1:6090845-609104 11 ATTATT 0.871068 43 + >chr1:5805347-580554 10 ATTATT 0.871068 65 - >chr1:4024990-402519 2 ATTATT 0.871068 188 + >chr1:3467418-346761 1 ATTATT 0.871068 24 - >chr1:9956513-995671 48 TGTATT 0.845348 68 - >chr1:9948240-994844 47 TGTATT 0.845348 84 + >chr1:9942670-994287 46 TGTATT 0.845348 156 - >chr1:9574131-957433 42 TGTATT 0.845348 48 + >chr1:7768736-776893 34 TGTATT 0.845348 126 + >chr1:5072821-507302 8 TGTATT 0.845348 43 + >chr1:4024990-402519 2 TGTATT 0.845348 173 + >chr1:3467418-346761 1 TGTATT 0.845348 114 + >chr1:3467418-346761 1 TGTATT 0.845348 27 - >chr1:3467418-346761 1 TGTATT 0.845348 5 - ********** 17) TTGAGT (ACTCAA) 1.574 Matrix: MAT17 TTGAGT A 0.1122 0.08252 0.1535 0.8677 0.167 0.08711 C 0.05038 0.01835 0.1439 0.01705 0.09193 0.05017 G 0.1 0.04409 0.647 0.02826 0.5944 0.03802 T 0.7373 0.855 0.05572 0.08702 0.1467 0.8247 OCCURRENCES: >chr1:9978791-997899 50 TTGAGT 1 34 - >chr1:9956513-995671 48 TTGAGT 1 83 - >chr1:9574131-957433 42 TTGAGT 1 43 + >chr1:9568576-956877 41 TTGAGT 1 90 + >chr1:8851545-885174 36 TTGAGT 1 94 - >chr1:7413722-741392 32 TTGAGT 1 165 + >chr1:7388801-738900 31 TTGAGT 1 78 - >chr1:7309743-730994 28 TTGAGT 1 133 + >chr1:7209035-720923 26 TTGAGT 1 90 + >chr1:6719561-671976 22 TTGAGT 1 140 - >chr1:6262414-626261 14 TTGAGT 1 132 + >chr1:6183701-618390 12 TTGAGT 1 56 + >chr1:5072821-507302 8 TTGAGT 1 174 - >chr1:4833767-483396 7 TTGAGT 1 3 + >chr1:9942670-994287 46 TTGAAT 0.89953 162 + >chr1:7444756-744495 33 TTGAAT 0.89953 134 + >chr1:7413722-741392 32 TTGAAT 0.89953 123 - >chr1:6721868-672206 23 TTGAAT 0.89953 85 + >chr1:6277750-627795 16 TTGAAT 0.89953 35 - >chr1:6277750-627795 16 TTGAAT 0.89953 25 + >chr1:6183701-618390 12 TTGAAT 0.89953 87 + >chr1:6090845-609104 11 TTGAAT 0.89953 119 - >chr1:6090845-609104 11 TTGAAT 0.89953 115 + >chr1:5072821-507302 8 TTGAAT 0.89953 155 - >chr1:9932599-993279 45 TTGATT 0.89477 47 - >chr1:9574131-957433 42 TTGATT 0.89477 147 - >chr1:8851545-885174 36 TTGATT 0.89477 118 - >chr1:8797248-879744 35 TTGATT 0.89477 7 + >chr1:6878570-687877 25 TTGATT 0.89477 92 - >chr1:4833767-483396 7 TTGATT 0.89477 128 + >chr1:4562216-456241 4 TTGATT 0.89477 144 + >chr1:4402453-440265 3 TTGATT 0.89477 130 + >chr1:4024990-402519 2 TTGATT 0.89477 185 + >chr1:9962925-996312 49 TTAAGT 0.884013 119 - >chr1:9932599-993279 45 TTAAGT 0.884013 11 + >chr1:9932599-993279 45 TTAAGT 0.884013 9 - >chr1:9574131-957433 42 TTAAGT 0.884013 58 - >chr1:9013525-901372 37 TTAAGT 0.884013 164 + >chr1:8797248-879744 35 TTAAGT 0.884013 120 + >chr1:8797248-879744 35 TTAAGT 0.884013 84 - >chr1:6396504-639670 18 TTAAGT 0.884013 109 - >chr1:6360131-636033 17 TTAAGT 0.884013 43 - >chr1:6396504-639670 18 TTGACT 0.881899 34 - >chr1:4833767-483396 7 TTGACT 0.881899 6 - >chr1:9813405-981360 44 ATGAGT 0.853079 136 + >chr1:6588721-658892 21 ATGAGT 0.853079 75 - >chr1:6472202-647240 20 ATGAGT 0.853079 20 + >chr1:6277750-627795 16 ATGAGT 0.853079 42 - >chr1:6262414-626261 14 ATGAGT 0.853079 178 + >chr1:6205539-620573 13 ATGAGT 0.853079 20 + ********** 18) TAAAAC (GTTTTA) 1.572 Matrix: MAT18 TAAAAC A 0.09976 0.6641 0.8508 0.8037 0.7918 0.1444 C 0.1021 0.08641 0.05693 0.04963 0.05966 0.5613 G 0.05432 0.1092 0.04048 0.04923 0.04498 0.06765 T 0.7438 0.1403 0.05175 0.09743 0.1036 0.2267 OCCURRENCES: >chr1:9813405-981360 44 TAAAAC 1 140 - >chr1:7388801-738900 31 TAAAAC 1 51 + >chr1:7303541-730374 27 TAAAAC 1 12 + >chr1:6472202-647240 20 TAAAAC 1 133 - >chr1:4774948-477514 6 TAAAAC 1 124 + >chr1:4662531-466273 5 TAAAAC 1 38 + >chr1:4024990-402519 2 TAAAAC 1 82 + >chr1:9956513-995671 48 TAAAAT 0.917837 185 - >chr1:9942670-994287 46 TAAAAT 0.917837 135 + >chr1:9813405-981360 44 TAAAAT 0.917837 132 + >chr1:9013525-901372 37 TAAAAT 0.917837 135 + >chr1:9013525-901372 37 TAAAAT 0.917837 113 + >chr1:8851545-885174 36 TAAAAT 0.917837 104 + >chr1:8797248-879744 35 TAAAAT 0.917837 147 + >chr1:7768736-776893 34 TAAAAT 0.917837 135 + >chr1:7413722-741392 32 TAAAAT 0.917837 11 - >chr1:7388801-738900 31 TAAAAT 0.917837 63 - >chr1:7386917-738711 29 TAAAAT 0.917837 31 + >chr1:6472202-647240 20 TAAAAT 0.917837 33 - >chr1:6266967-626716 15 TAAAAT 0.917837 3 + >chr1:6262414-626261 14 TAAAAT 0.917837 184 - >chr1:6205539-620573 13 TAAAAT 0.917837 158 + >chr1:6205539-620573 13 TAAAAT 0.917837 29 + >chr1:6090845-609104 11 TAAAAT 0.917837 150 - >chr1:5805347-580554 10 TAAAAT 0.917837 155 - >chr1:5072821-507302 8 TAAAAT 0.917837 115 + >chr1:4833767-483396 7 TAAAAT 0.917837 122 + >chr1:4024990-402519 2 TAAAAT 0.917837 118 + >chr1:3467418-346761 1 TAAAAT 0.917837 183 - >chr1:3467418-346761 1 TAAAAT 0.917837 134 - >chr1:9962925-996312 49 TTAAAC 0.871367 7 + >chr1:9942670-994287 46 TTAAAC 0.871367 80 + >chr1:9013525-901372 37 TTAAAC 0.871367 162 - >chr1:9013525-901372 37 TTAAAC 0.871367 110 - >chr1:8797248-879744 35 TTAAAC 0.871367 118 - >chr1:7444756-744495 33 TTAAAC 0.871367 99 - >chr1:7413722-741392 32 TTAAAC 0.871367 188 - >chr1:7388801-738900 31 TTAAAC 0.871367 37 + >chr1:6360131-636033 17 TTAAAC 0.871367 143 + >chr1:6360131-636033 17 TTAAAC 0.871367 7 - >chr1:5805347-580554 10 TTAAAC 0.871367 17 + >chr1:5072821-507302 8 TTAAAC 0.871367 150 - >chr1:4833767-483396 7 TAAATC 0.831007 94 - >chr1:4662531-466273 5 TAAATC 0.831007 56 + >chr1:9574131-957433 42 TAATAC 0.826572 163 + >chr1:7768736-776893 34 TAATAC 0.826572 127 - >chr1:5072821-507302 8 TAATAC 0.826572 44 - >chr1:4833767-483396 7 TAATAC 0.826572 19 - >chr1:3467418-346761 1 TAATAC 0.826572 26 + >chr1:3467418-346761 1 TAATAC 0.826572 4 + ********** 19) GTGAAT (ATTCAC) 1.568 Matrix: MAT19 GTGAAT A 0.1593 0.04483 0.06949 0.8955 0.7175 0.1105 C 0.07553 0.01876 0.09003 0.01629 0.08374 0.06563 G 0.6152 0.0609 0.7443 0.03019 0.08214 0.05749 T 0.15 0.8755 0.09618 0.05804 0.1166 0.7664 OCCURRENCES: >chr1:9956513-995671 48 GTGAAT 1 79 - >chr1:7209035-720923 26 GTGAAT 1 156 - >chr1:6878570-687877 25 GTGAAT 1 53 + >chr1:6588721-658892 21 GTGAAT 1 30 - >chr1:6437830-643803 19 GTGAAT 1 123 + >chr1:6277750-627795 16 GTGAAT 1 29 - >chr1:6266967-626716 15 GTGAAT 1 15 + >chr1:6262414-626261 14 GTGAAT 1 174 + >chr1:5168670-516887 9 GTGAAT 1 154 - >chr1:4402453-440265 3 GTGAAT 1 133 - >chr1:4024990-402519 2 GTGAAT 1 62 + >chr1:9574131-957433 42 ATGAAT 0.89386 83 + >chr1:9574131-957433 42 ATGAAT 0.89386 51 - >chr1:9013525-901372 37 ATGAAT 0.89386 117 - >chr1:8851545-885174 36 ATGAAT 0.89386 86 - >chr1:7303541-730374 27 ATGAAT 0.89386 171 - >chr1:7303541-730374 27 ATGAAT 0.89386 107 + >chr1:6437830-643803 19 ATGAAT 0.89386 130 - >chr1:6183701-618390 12 ATGAAT 0.89386 71 + >chr1:5072821-507302 8 ATGAAT 0.89386 127 + >chr1:5072821-507302 8 ATGAAT 0.89386 87 - >chr1:5072821-507302 8 ATGAAT 0.89386 21 + >chr1:9942670-994287 46 TTGAAT 0.891676 162 + >chr1:7444756-744495 33 TTGAAT 0.891676 134 + >chr1:7413722-741392 32 TTGAAT 0.891676 123 - >chr1:6721868-672206 23 TTGAAT 0.891676 85 + >chr1:6277750-627795 16 TTGAAT 0.891676 35 - >chr1:6277750-627795 16 TTGAAT 0.891676 25 + >chr1:6183701-618390 12 TTGAAT 0.891676 87 + >chr1:6090845-609104 11 TTGAAT 0.891676 119 - >chr1:6090845-609104 11 TTGAAT 0.891676 115 + >chr1:5072821-507302 8 TTGAAT 0.891676 155 - >chr1:9956513-995671 48 GTGATT 0.860082 176 + >chr1:9932599-993279 45 GTGATT 0.860082 129 - >chr1:9568576-956877 41 GTGATT 0.860082 22 + >chr1:9554705-955490 40 GTGATT 0.860082 126 + >chr1:6472202-647240 20 GTGATT 0.860082 76 + >chr1:4833767-483396 7 GTGATT 0.860082 188 - >chr1:3467418-346761 1 GTGATT 0.860082 51 - >chr1:9956513-995671 48 GTTAAT 0.849088 112 + >chr1:9932599-993279 45 GTTAAT 0.849088 44 + >chr1:9574131-957433 42 GTTAAT 0.849088 106 + >chr1:9554705-955490 40 GTTAAT 0.849088 49 + >chr1:9013525-901372 37 GTTAAT 0.849088 173 + >chr1:6721868-672206 23 GTTAAT 0.849088 172 - >chr1:4662531-466273 5 GTTAAT 0.849088 159 - >chr1:9942670-994287 46 GTCAAT 0.847655 91 - >chr1:7768736-776893 34 GTCAAT 0.847655 76 + >chr1:7444756-744495 33 GTCAAT 0.847655 10 + >chr1:7209035-720923 26 GTCAAT 0.847655 123 + ********** 20) AATACA (TGTATT) 1.564 Matrix: MAT20 AATACA A 0.8268 0.7796 0.1396 0.6772 0.1349 0.8374 C 0.05488 0.04317 0.05118 0.06514 0.7076 0.03498 G 0.04696 0.05148 0.06801 0.08048 0.04932 0.01976 T 0.0714 0.1257 0.7412 0.1771 0.1081 0.1079 OCCURRENCES: >chr1:9962925-996312 49 AATACA 1 83 + >chr1:9956513-995671 48 AATACA 1 68 + >chr1:9948240-994844 47 AATACA 1 84 - >chr1:9942670-994287 46 AATACA 1 156 + >chr1:9574131-957433 42 AATACA 1 48 - >chr1:7768736-776893 34 AATACA 1 126 - >chr1:5072821-507302 8 AATACA 1 43 - >chr1:4024990-402519 2 AATACA 1 173 - >chr1:3467418-346761 1 AATACA 1 114 - >chr1:3467418-346761 1 AATACA 1 27 + >chr1:3467418-346761 1 AATACA 1 5 + >chr1:9956513-995671 48 AATTCA 0.883548 78 + >chr1:9942670-994287 46 AATTCA 0.883548 163 - >chr1:9013525-901372 37 AATTCA 0.883548 116 + >chr1:8851545-885174 36 AATTCA 0.883548 85 + >chr1:7303541-730374 27 AATTCA 0.883548 56 + >chr1:6878570-687877 25 AATTCA 0.883548 86 - >chr1:6878570-687877 25 AATTCA 0.883548 54 - >chr1:6721868-672206 23 AATTCA 0.883548 72 + >chr1:6437830-643803 19 AATTCA 0.883548 129 + >chr1:6277750-627795 16 AATTCA 0.883548 28 + >chr1:6277750-627795 16 AATTCA 0.883548 26 - >chr1:6266967-626716 15 AATTCA 0.883548 16 - >chr1:6090845-609104 11 AATTCA 0.883548 118 + >chr1:6090845-609104 11 AATTCA 0.883548 116 - >chr1:5072821-507302 8 AATTCA 0.883548 154 + >chr1:9956513-995671 48 AATATA 0.860396 155 - >chr1:9942670-994287 46 AATATA 0.860396 119 - >chr1:9813405-981360 44 AATATA 0.860396 31 + >chr1:9013525-901372 37 AATATA 0.860396 78 + >chr1:7768736-776893 34 AATATA 0.860396 2 + >chr1:7413722-741392 32 AATATA 0.860396 87 - >chr1:7413722-741392 32 AATATA 0.860396 85 + >chr1:6472202-647240 20 AATATA 0.860396 2 - >chr1:6360131-636033 17 AATATA 0.860396 26 + >chr1:9813405-981360 44 ATTACA 0.84772 147 + >chr1:6878570-687877 25 ATTACA 0.84772 38 - >chr1:6719561-671976 22 ATTACA 0.84772 127 + >chr1:6588721-658892 21 ATTACA 0.84772 140 - >chr1:6090845-609104 11 ATTACA 0.84772 89 - >chr1:5805347-580554 10 ATTACA 0.84772 147 + >chr1:5805347-580554 10 ATTACA 0.84772 125 + >chr1:4833767-483396 7 ATTACA 0.84772 107 - >chr1:4774948-477514 6 ATTACA 0.84772 9 - >chr1:7388801-738900 31 AATACT 0.830134 75 + >chr1:7209035-720923 26 AATACT 0.830134 10 + >chr1:6262414-626261 14 AATACT 0.830134 181 - >chr1:5805347-580554 10 AATACT 0.830134 152 - >chr1:4833767-483396 7 AATACT 0.830134 18 - >chr1:4402453-440265 3 AATACT 0.830134 177 - **********