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comparison 2.4/src/wyawpalt.sc.direction.bed.sc.merge.bed @ 13:e3609c8714fb draft

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author plus91-technologies-pvt-ltd
date Fri, 30 May 2014 03:37:55 -0400
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12:980fce54e60a 13:e3609c8714fb
1 chr1 40522 40523 CAGTACTACCTTGTCACTTTTGAGCCGA|left;CAGAGCCAGTACTACCTTGTCACTTTTGAGCCGA|left;CTCCTTCAGAGCCAGTACTACCTTGTCACTTTTGAGCCGA|left;TACCTTGTCACTTTCGAGCCGA|left;TGCCTCCTTCAGAGCCAGTACTACCTTGTCACTTTTGAGCCGA|left;GTACTACCTTGTCACTTTTGAGCCGA|left
2 chr1 40524 40525 TCCTTCAGAGCCAGTACTACCTTGTCCCTTTTGAGCCGAT|left;CTTTTGAGCCGAT|left
3 chr1 40526 40527 GCCAGTAC|right;GCCAGTACTACCTTGTCACTTTTGAGCCGATCTT|right;GCCAGTACTACCTTGTCACTTTTGAGCCGATCTTG|right;GCCAGTACTACCTTGTCACTTTTGAGCCGATCTTGTACTTA|right;GCCAGTACTACCTTGTCACTTTTGAGCCGATCTTGTACTTAAAA|right
4 chr1 56197 56199 ATGATTAAT|left
5 chr1 56197 56199 CTTCAG|right
6 chr1 127482 127483 CACAAACATGTTCAG|left;ATATAACTCACAAACATGTTCAG|left;AATATAACTCACAAACATGTTCAG|left
7 chr1 163339 163340 AGAATGGG|right;AAAATGGGTCTTAACTGGCTATGTGA|right
8 chr1 261943 261944 TACATGTTCA|right;TACATGTTCAC|right
9 chr1 524429 524430 GGAGATTGCGGTGAGCGGAGAGC|right;GGAGATTGCGGTGAGCGGAGAGCGCACCATT|right
10 chr1 525962 525963 CTCCTTGACCAAACTCCATTCAGGCTCCCT|left;ATTCAGGCTCCTT|left;ATTCAGGCTCCTT|left
11 chr1 525966 525967 CATTCAGGCTCCTTTG|left;TCCTTGACCAAACTCCATTCAGGCTCCTTTG|left;AGGCTCCTTTG|left;TCAGGCTCCTTTG|left;CTCCTTTG|left;CTCCTTTG|left;AAAGACGCTCTCCTTGACCAAACTCCATTCAGGCTCCTTTG|left
12 chr1 711513 711514 ATTACGAGAT|left;ACGAGAT|left;CGAGAT|left
13 chr1 711516 711517 GAGATC|right;GAGATCA|right;GAGATCAGG|right
14 chr1 754039 754040 GGGCCTGCA|right;GGGCCTG|right;GGGCCTGC|right;AGGCCTGCATTCCTCTCTCTAGG|right;GGGCCT|right;GGGCC|right;GGGCCTGCATT|right;GGGCCTGCATTTATC|right;GGGCCAGCATTCATCTCTCTA|right;GGGCCTGCATTCATCTCTCTA|right;GGGCCTGCATTCATCTC|right;GGGCCTGCATTCATC|right;GGGCCTGCATTCATC|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGCAGCTG|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTC|right;GGGCCTGCATTCATCTCTCTAGGGCAACG|right;GGGCCTGCATTCATCTCTCTAGGGCAACGT|right;GGGCCTGCATTCATCTCTCTAGG|right;GGGCCTGCATTCATCTCTCTAGGGCAAC|right;GGGCCTGCATTCATCTCTCTAGGGCAA|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCT|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGCAGCTG|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGCAGCT|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGCAGC|right;GGGCCTGCATTCTTCTCTCTAGGGCAACGTCGGCT|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGC|right
15 chr1 754077 754078 TAGAATATTGTTACATAAAAGT|left;TAAAAGT|left;TAAAAGT|left;TACATAAAAGT|left;TAAAAGT|left;TAGAATATTGTTACATAAAAGT|left;ATATTAGAATATTGTTACATAAAAG|left
16 chr1 754079 754080 AAAAGTC|left;TTAGAATATTGTTACATAAAAGTC|left;CATAAAAGTC|left;TAAATATTAGAATATTGTTACATAAAAGTC|left;TTACATAAAAGTC|left;ACCTAAAAGTC|left;TGTTGTAAATATTAGAATATTGTTACATAAAAGTC|left;TGTTACATAAAAGTC|left;AGAATATTGTTACATAAAAGTC|left;GTTACATAAAAGTC|left;TGTTACATAAAAGTC|left;TTGTTACATAAAAGTC|left;GATTAATGTTGTACATATTAGAATATTGTTACATAAAAGTC|left;TTGTAAATATTAGAATATTGTTACATAAAAGTC|left;ATTGTTACATAAAAGTC|left;AATATTAGAATATTGTTCCATAAAAGTC|left;AATATTAGAATATTGTTACATAAAAGTC|left;TAATGTTGTAAATATTAGAATATTGTTACATAAAAGTC|left;TGTTGTAAATATTAGAATATTGTTACATAAAAGTC|left
17 chr1 771753 771755 GCTGCCTGGAGTACCTC|right;CTGCCTGG|right;CTGCCTGG|right;CTGCCTGG|right;CTGCCTGGA|right;CTGCCTG|right;CTGCCTG|right;CTGCCT|right;CTGCCTGGAGT|right;CAACCTGGAGT|right;CTGCCTGGAGTA|right;CTACCTGGAGTACCTCC|right;CTGCCTGGAGTATCTCCA|right;CTGCCTGGAG|right
18 chr1 771761 771762 CGGGGCCTTT|left;CGGGGCCTTT|left
19 chr1 773904 773905 TGTAGCCTTTTCAGACTGGCTTCTTTCTCT|left;TTCACT|left;GTGTAGCCTTTTCAGACTGGCTTCTTTCACT|left;GGTGTAGCCTTTTCAGACTGGCTTCTTTCACT|left;ACTGGCTTCTTTCACT|left;TAGCCTTTTCAGACTGGCTTCTTTCACT|left;CTTTTCAGACTGGCATCTTTCACT|left;CTGGCTTCTTTCACT|left;GACTGGCTTCTTTCACT|left;TTCAGACTGGCTTCTTTCACT|left;GACAGGCTTCTTTCACT|left
20 chr1 773904 773905 ACCATTTATGCATTTAAA|right
21 chr1 773907 773908 ATTTATGCATTTAA|right;ATTTATGCATTTAAAGTTC|right;ATTTATGCATTTAAAGTTCCCCCATATTTTTT|right;ATTTATGCATTTAAAGTTCCCCCATATTTTTTC|right;ATTTATGC|right;ATTTATG|right;ATTTATGCA|right
22 chr1 773963 773966 CTTTTTCC|left;TGTCTTGGTAATTCTGCTTTTTCC|left;TTTCACTGTGTTGGTAATTCTGCTTTTTCCA|left;TTATCTTTCACTGTGTTGGTAATTCTGCTTTTTCCA|left;TAATTCTGCTTTTTCCA|left;CACTGTGATGGTAATTCTGCTTTTTCCA|left;GTAATTCTGCTTTTTCCA|left;TTTCCA|left;AATTCTGCTTTTTCCA|left;CTTATCTTTCACTGTGTTGGTAATTCTGCTTTTTCCA|left
23 chr1 773967 773968 GGATGTCCTGTAGTTGGA|right;GGATGTCCTG|right;GGATGTCCTG|right;GGATGTCCTGTAGT|right;GGATGTCCTGTAGT|right
24 chr1 781562 781563 GGTTTTCTCTG|left;ATCTGTGGCTTTCTCTG|left;GTGGTTTTCTCTG|left;TGTGGTTTTCTCTG|left;GTTTTCTCTG|left
25 chr1 781565 781566 GCTCTCTGTGAAGCTTCT|right;GCTCTCTGTTA|right;GCTCTCTGTTAA|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCT|right;GCTCTCTGTTAAGCTTCTGCTGGT|right;GCTCTCTGTTAAGCTTCTGCTG|right;GCTCTCTG|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCT|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCTT|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCTT|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCTTTGGTGTC|right;GCTCTCTGTT|right
26 chr1 781620 781621 TCTGATATTGCTCCTCAGAGG|left;GCTTAGGGACGTAGCTCTGATATTGCTACTCAGAGG|left
27 chr1 781622 781623 GATATTGCTCCTCAGAGGG|left;GATATTGCTCCTCAGAGGG|left;CTCCTCAGAGGG|left
28 chr1 781624 781625 CACAGCCT|right;CACAGCTTTGGAC|right;CACAGCCTTGGACTAG|right;CACAGCCTTGGACTAGCACAC|right;CACAGCCTTGGACTAGCACACAG|right;CACAGCCTTGGACTAGCACACAGT|right;CACGGCCTTGGACTAGCACACAGTCTCTCC|right;CACAGCCTTGGACTAGCACACAGTCTCTCCGACCAC|right;CACAGCATTG|right;CACAGCCTTGGACTAGCACACAGTCTCTCCGACCACCTGTGG|right;CACAGCCTTGGA|right;CACAGCCTTGGACTAGCACACAGTCT|right
29 chr1 813538 813539 CTTTCTTA|left;CTTTCTTA|left
30 chr1 813646 813647 TATAGTTATTAAAC|left;TAGGTTACACATTTTATGTCTAAAAATATAGTTATTAAAC|left;ATAGTTATTAAAC|left;TCTAAAAATATAGTTATTAAAC|left
31 chr1 813648 813650 TATAGTTATTAAACGCC|left
32 chr1 813648 813650 ACCCAAGAATGGATAAA|right;ACCCAAGAATGGATAAAA|right;ACCCAAGAATGGATA|right;ACCCAAGAATGGATA|right;ACCCAAGAA|right;ACCCAAGAATGGATAAAA|right;ACCCAAGAATGGATAAAA|right;ACCCAAGAATGGATAAATGAAGAAA|right;ACCCAAGAATGGATAAAAAAAGAAATCACAAGAG|right;ACCCAAGAATGGATAAAAGAAGAAATCACAAGAGA|right
33 chr1 816788 816789 AGGCCACTGAATGTCACAG|left;TGAATGTCACAG|left
34 chr1 816790 816791 ACACTAGCTGCAAACAAGGCCACTGAATGTCACAGC|left;CATCACACTAGCTGCAAACAAGGCCACTGAATGTCACAGC|left;CACAGC|left;ATGTCACAGC|left;CACAGC|left;ATGTCACAGC|left;CTGCAAACAAGGCCACTGAATGTCACAGC|left;AAACAAGGCCACTGAATGTCACAGC|left;AAACAAGGCCACAGAATGTCACAGC|left;CAAGGCCACTGAATGTCACAGC|left
35 chr1 816792 816793 AGGTGGCTGGCATGTCT|right;AGGTGGCTGGCATGTCTGTGAA|right;AGGTGGCTGGCATGTCTGTGAAGGGC|right;AGGTGGCTGGCATGTCTGTGAAGGGCAG|right;AGGTGGCTGGCATGTCTGTGAAGGGCAGAAACT|right;AGGTGGCTGGCAT|right;AGGTGGCTGG|right;AGGTGGCTG|right;AGGTGGCTG|right;AGGTGGCTGGCATGTCTGTGAAGGGCAGAAACTGGGG|right;AGGTGGCTGGCATGTCTG|right;AGGTGGCTGGCATGTCTGTGAAGGGCAGAAACTGG|right;AGGTG|right;AGGTGGCT|right;AGGTGGC|right;AGGTG|right
36 chr1 855228 855231 GATGCCTGTAGTCCCAGC|right;TTGCCTGTAGTCCCAGCTACTTGGGAGGCT|right;TGCCTGT|right;TGCCTGTA|right;TGCCTGT|right;TGCCTGTAGTCCCAGCTACTTGG|right;TGCCTGTAG|right;TGCCTGTAGTCCCA|right;TGCCTGTAGTCCCAGC|right;TGCCTGTAGTCCCAGC|right;TGCCTGTAGTCCCAGCT|right;TGCCTGTAGTCCCAGCTACT|right;TGCCTGTAGTC|right;TGCCTGTAGTCCCAGCTA|right;TGCCTGTAGTCCCAGCTACTTGGGAGG|right;TGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG|right;TGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGC|right;TGCGTGTAGTCCCCGCTACTTGGGAGGCTG|right
37 chr1 863640 863641 GGTCCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;GGTCCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;CCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;ACGCGGGCCAGGTCGAGGCTGC|left;GTCCCCTCCACAACCCGGGCCAGGTCCAGTCTGC|left;GGTCCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;CGGGCCAGGTCCAGGCTGC|left;CCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;CAACCCGGGCCAGGTCCAGGCTGC|left;CCCGGTCCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left
38 chr1 863642 863643 GGCCAGGTCCAGGCTGCA|left;GGCTGCA|left;GCCAGGTCCAGGCTGCA|left;CAGGCTGCA|left;GGCTGCA|left;TCCAGGCTGCA|left
39 chr1 891136 891137 TTCTCAGGGTCCCCAAGAAGAAG|right;TTCTCA|right;TTTTCA|right;TTCTCAG|right;TTCTCAGG|right;TTCTCAGGGTCCCCA|right;TTCTCAGGGTCCCCAA|right;TTCTCAGGGTCCCCAAG|right;TTCTCAGGGTCCCCAAGAA|right;TTCTCTGGGTCCCCAAGAAG|right;TTCTCAGGGCCCCCAAGAAG|right;TTCTCAGGGTCCCCAAGAAG|right;TTCTCAGGGTCCCCAAGAGGA|right;TTCTCAAGGTCCCCAAGAAGAC|right;TTCTCAAGGTCCCCAAGAAGACGC|right;TTCTCAGGGTCCCCAAGAAGACGC|right;TTCTCAGGGTCCCCAAGAAGACGCT|right;TTCTCAGGGTCCCCAAGAAGACGCTGTC|right;TTCTCAGGGTCCCCAAGAAGACGCTGGCT|right;TTCTCAGGGTCCCCAAGAAGACGCTGGCTC|right;TTCTCAGGGTCCCCAAGAAGACGCTGGCTCTGTT|right;TTCTCAGGGTCCCTAAGAAGACGCTGGCTCTGTTG|right;TTCTCAGGGTCCCCAAGAAGACGCTGGCTCTGTTG|right;TTCTCAGGGTCCCCAAGAAGACGATGGGTCTGTTGCC|right
40 chr1 891167 891168 CAAGT|left;GCTCCAACTGGCCCCAAGT|left;CAAGT|left;CAAGT|left
41 chr1 891169 891171 GGCCGCTCCAACTGGCCCCAAGTG|left;TCCAACTGGCCCCAAGTG|left;TGGGGCCGCTCCAACTGGCCCCAAGTG|left;GGGGCCGCTCCAACTGGCCCCAAGTG|left;TGGGCCCAAGTG|left;TCCAACTGGCCCCAAGTG|left;CTCCAACTGGCCCCAAGTG|left;CTTCAACTGGCCCCAAGTG|left;CCAAATGGCCCCAAGTG|left;GCCGCTCCAACTGGCCCCAAGTG|left;CCAAGTG|left;GCTCCAAGTG|left;GAAAGAAGGTGGGGCCGCTCCAACTGGCCCCAAGTG|left;GGGACGCTCCAACCGGCCCCAAGTG|left;GGCCGCTACAACTGGCCCCAAGTG|left;TGGGGCCGCTCCAACTCGCCCCAAGTG|left;GGTGGGGCCGCTCCAACTGGCCCCAAGTG|left;CCGCTCCAACTGGCCCCAAGCGCT|left
42 chr1 903613 903614 TGGAGACCAGATGCAGA|left;AGATGCAGA|left;TGGAGACCAGATGCAGA|left
43 chr1 903615 903616 CTGGAGACCAGATGCAGAG|left;CAGATGCAGAG|left;GCAGAG|left;TGCAGAG|left;ACCAGATGCAGAG|left;GGTCCGGCGTCTTCTGGAGACCAGATGCAGAG|left;AGACCAGATGCAGAG|left
44 chr1 903617 903618 GCTTCTGCAGGG|right;GCTTCTGCAGGGCCGTGCG|right;GCTTCTGCAGGGCCCTGC|right;GCTTCTGCAGGGTCCTGCC|right;GCTTCTGCATGGCCCTGCCCC|right;GCTTCTGCAGGGCGCTGCCCCA|right;GCTTCTGCAGGGCCCTGCCCCACGGCCCC|right;GCTTCTGCAGGGCCCTGCCCCACGGCCCCC|right;GCTTCTGCAGGGCCCTGCCCCACGGCCCCCTGGTGAGC|right;GCTTCTGCAGGG|right;GCTT|right;GCTTCTG|right;GCTTCTGCAG|right;GCTTCTGC|right
45 chr1 915985 915986 TGCCCTGGCCAAGCTTAGCTGCCCCTGAGCAGGCCCA|left;TGAGCAGGCCCA|left
46 chr1 915987 915988 AGGCCCAG|left;GCTGCCCCTGAGCAGGCCCAG|left
47 chr1 915989 915990 CCCTGAGCAGGCCCAGG|left;AGCTGCCCCTGAGCAGGCCCAGG|left;GGCCCAGG|left;GAGCAGGCCCAGG|left;AGCTGCCCCTGAGCAGGCCCAGG|left;GCAGGCCCAGG|left;AGCTGCCCCTGAGCAGGCCCAGG|left
48 chr1 915991 915992 AATGTGAACAGACAGACGCATGGCTTTCCCG|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCTTCTGCCT|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCTTCT|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCTTC|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCTT|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCT|right;AATGTGAACAGACAGACGCATGGCTTTCCCG|right;AATGTGAACAGACAGAC|right;AATGTGAACAGAC|right;AATGTGAACAGACAGACGCATGGCTTT|right;AATGTGAACA|right;AATGTG|right;AATGTGAACAGACAGAC|right;AATGTGAACAGACAGAC|right
49 chr1 938004 938005 CACGATGGCA|left;ATCGCA|left;ATGGCA|left;ATGGGAACAGCAAGCAAGACCTCACGATGGCA|left;GATGGCA|left
50 chr1 938009 938010 GCCACACCCTCC|right;GCCACATCCTCCAC|right;GCCACACCCTCCACATCCGCAGA|right;GCCACACCCTCCACATCCGCAGAAGC|right
51 chr1 958306 958307 ACTCCGTCTCAAAAAAGAAAAAAAAAAAGTAGAATCTCCT|left;AAAAAGTAGAATCTCCT|left;AAAAGAAAAAAAAAAAGTAGAATCTCCT|left;AGTAGAATCTCCT|left;GTAGAATCTCCT|left;AGTAGAATCTCCT|left;AAAGTAGAATCTCCT|left;AAAAAGTAGAATCTCCT|left;TAGAATCTCCT|left;AGTAGAATCTCCT|left
52 chr1 958311 958312 AAGACCAGCCT|right;AAGACCAGCCTGGCCAACACAGTGAAACCCCATCT|right;AAGACCA|right;AAGACAA|right;AAGACCAGCCTG|right;AAGACCAGCCTGGCCAAC|right;AAGACCAGCCTGGCCAACACA|right;AAGACCAGCCTGGCCAACACAGTGAAAC|right;AAGACCAGCCTGGCCAACACAGTGAAACCCC|right;AAGACCAGCCTGGCCAACACAGTGAAACCCCATC|right;AAGACCAGCCTG|right