--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/2.4/src/wyawpalt.sc.direction.bed.sc.merge.bed	Fri May 30 03:37:55 2014 -0400
@@ -0,0 +1,52 @@
+chr1	40522	40523	CAGTACTACCTTGTCACTTTTGAGCCGA|left;CAGAGCCAGTACTACCTTGTCACTTTTGAGCCGA|left;CTCCTTCAGAGCCAGTACTACCTTGTCACTTTTGAGCCGA|left;TACCTTGTCACTTTCGAGCCGA|left;TGCCTCCTTCAGAGCCAGTACTACCTTGTCACTTTTGAGCCGA|left;GTACTACCTTGTCACTTTTGAGCCGA|left
+chr1	40524	40525	TCCTTCAGAGCCAGTACTACCTTGTCCCTTTTGAGCCGAT|left;CTTTTGAGCCGAT|left
+chr1	40526	40527	GCCAGTAC|right;GCCAGTACTACCTTGTCACTTTTGAGCCGATCTT|right;GCCAGTACTACCTTGTCACTTTTGAGCCGATCTTG|right;GCCAGTACTACCTTGTCACTTTTGAGCCGATCTTGTACTTA|right;GCCAGTACTACCTTGTCACTTTTGAGCCGATCTTGTACTTAAAA|right
+chr1	56197	56199	ATGATTAAT|left
+chr1	56197	56199	CTTCAG|right
+chr1	127482	127483	CACAAACATGTTCAG|left;ATATAACTCACAAACATGTTCAG|left;AATATAACTCACAAACATGTTCAG|left
+chr1	163339	163340	AGAATGGG|right;AAAATGGGTCTTAACTGGCTATGTGA|right
+chr1	261943	261944	TACATGTTCA|right;TACATGTTCAC|right
+chr1	524429	524430	GGAGATTGCGGTGAGCGGAGAGC|right;GGAGATTGCGGTGAGCGGAGAGCGCACCATT|right
+chr1	525962	525963	CTCCTTGACCAAACTCCATTCAGGCTCCCT|left;ATTCAGGCTCCTT|left;ATTCAGGCTCCTT|left
+chr1	525966	525967	CATTCAGGCTCCTTTG|left;TCCTTGACCAAACTCCATTCAGGCTCCTTTG|left;AGGCTCCTTTG|left;TCAGGCTCCTTTG|left;CTCCTTTG|left;CTCCTTTG|left;AAAGACGCTCTCCTTGACCAAACTCCATTCAGGCTCCTTTG|left
+chr1	711513	711514	ATTACGAGAT|left;ACGAGAT|left;CGAGAT|left
+chr1	711516	711517	GAGATC|right;GAGATCA|right;GAGATCAGG|right
+chr1	754039	754040	GGGCCTGCA|right;GGGCCTG|right;GGGCCTGC|right;AGGCCTGCATTCCTCTCTCTAGG|right;GGGCCT|right;GGGCC|right;GGGCCTGCATT|right;GGGCCTGCATTTATC|right;GGGCCAGCATTCATCTCTCTA|right;GGGCCTGCATTCATCTCTCTA|right;GGGCCTGCATTCATCTC|right;GGGCCTGCATTCATC|right;GGGCCTGCATTCATC|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGCAGCTG|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTC|right;GGGCCTGCATTCATCTCTCTAGGGCAACG|right;GGGCCTGCATTCATCTCTCTAGGGCAACGT|right;GGGCCTGCATTCATCTCTCTAGG|right;GGGCCTGCATTCATCTCTCTAGGGCAAC|right;GGGCCTGCATTCATCTCTCTAGGGCAA|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCT|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGCAGCTG|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGCAGCT|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGCAGC|right;GGGCCTGCATTCTTCTCTCTAGGGCAACGTCGGCT|right;GGGCCTGCATTCATCTCTCTAGGGCAACGTCGGCTGC|right
+chr1	754077	754078	TAGAATATTGTTACATAAAAGT|left;TAAAAGT|left;TAAAAGT|left;TACATAAAAGT|left;TAAAAGT|left;TAGAATATTGTTACATAAAAGT|left;ATATTAGAATATTGTTACATAAAAG|left
+chr1	754079	754080	AAAAGTC|left;TTAGAATATTGTTACATAAAAGTC|left;CATAAAAGTC|left;TAAATATTAGAATATTGTTACATAAAAGTC|left;TTACATAAAAGTC|left;ACCTAAAAGTC|left;TGTTGTAAATATTAGAATATTGTTACATAAAAGTC|left;TGTTACATAAAAGTC|left;AGAATATTGTTACATAAAAGTC|left;GTTACATAAAAGTC|left;TGTTACATAAAAGTC|left;TTGTTACATAAAAGTC|left;GATTAATGTTGTACATATTAGAATATTGTTACATAAAAGTC|left;TTGTAAATATTAGAATATTGTTACATAAAAGTC|left;ATTGTTACATAAAAGTC|left;AATATTAGAATATTGTTCCATAAAAGTC|left;AATATTAGAATATTGTTACATAAAAGTC|left;TAATGTTGTAAATATTAGAATATTGTTACATAAAAGTC|left;TGTTGTAAATATTAGAATATTGTTACATAAAAGTC|left
+chr1	771753	771755	GCTGCCTGGAGTACCTC|right;CTGCCTGG|right;CTGCCTGG|right;CTGCCTGG|right;CTGCCTGGA|right;CTGCCTG|right;CTGCCTG|right;CTGCCT|right;CTGCCTGGAGT|right;CAACCTGGAGT|right;CTGCCTGGAGTA|right;CTACCTGGAGTACCTCC|right;CTGCCTGGAGTATCTCCA|right;CTGCCTGGAG|right
+chr1	771761	771762	CGGGGCCTTT|left;CGGGGCCTTT|left
+chr1	773904	773905	TGTAGCCTTTTCAGACTGGCTTCTTTCTCT|left;TTCACT|left;GTGTAGCCTTTTCAGACTGGCTTCTTTCACT|left;GGTGTAGCCTTTTCAGACTGGCTTCTTTCACT|left;ACTGGCTTCTTTCACT|left;TAGCCTTTTCAGACTGGCTTCTTTCACT|left;CTTTTCAGACTGGCATCTTTCACT|left;CTGGCTTCTTTCACT|left;GACTGGCTTCTTTCACT|left;TTCAGACTGGCTTCTTTCACT|left;GACAGGCTTCTTTCACT|left
+chr1	773904	773905	ACCATTTATGCATTTAAA|right
+chr1	773907	773908	ATTTATGCATTTAA|right;ATTTATGCATTTAAAGTTC|right;ATTTATGCATTTAAAGTTCCCCCATATTTTTT|right;ATTTATGCATTTAAAGTTCCCCCATATTTTTTC|right;ATTTATGC|right;ATTTATG|right;ATTTATGCA|right
+chr1	773963	773966	CTTTTTCC|left;TGTCTTGGTAATTCTGCTTTTTCC|left;TTTCACTGTGTTGGTAATTCTGCTTTTTCCA|left;TTATCTTTCACTGTGTTGGTAATTCTGCTTTTTCCA|left;TAATTCTGCTTTTTCCA|left;CACTGTGATGGTAATTCTGCTTTTTCCA|left;GTAATTCTGCTTTTTCCA|left;TTTCCA|left;AATTCTGCTTTTTCCA|left;CTTATCTTTCACTGTGTTGGTAATTCTGCTTTTTCCA|left
+chr1	773967	773968	GGATGTCCTGTAGTTGGA|right;GGATGTCCTG|right;GGATGTCCTG|right;GGATGTCCTGTAGT|right;GGATGTCCTGTAGT|right
+chr1	781562	781563	GGTTTTCTCTG|left;ATCTGTGGCTTTCTCTG|left;GTGGTTTTCTCTG|left;TGTGGTTTTCTCTG|left;GTTTTCTCTG|left
+chr1	781565	781566	GCTCTCTGTGAAGCTTCT|right;GCTCTCTGTTA|right;GCTCTCTGTTAA|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCT|right;GCTCTCTGTTAAGCTTCTGCTGGT|right;GCTCTCTGTTAAGCTTCTGCTG|right;GCTCTCTG|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCT|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCTT|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCTT|right;GCTCTCTGTTAAGCTTCTGCTGGTCTGTCTCTCTTTGGTGTC|right;GCTCTCTGTT|right
+chr1	781620	781621	TCTGATATTGCTCCTCAGAGG|left;GCTTAGGGACGTAGCTCTGATATTGCTACTCAGAGG|left
+chr1	781622	781623	GATATTGCTCCTCAGAGGG|left;GATATTGCTCCTCAGAGGG|left;CTCCTCAGAGGG|left
+chr1	781624	781625	CACAGCCT|right;CACAGCTTTGGAC|right;CACAGCCTTGGACTAG|right;CACAGCCTTGGACTAGCACAC|right;CACAGCCTTGGACTAGCACACAG|right;CACAGCCTTGGACTAGCACACAGT|right;CACGGCCTTGGACTAGCACACAGTCTCTCC|right;CACAGCCTTGGACTAGCACACAGTCTCTCCGACCAC|right;CACAGCATTG|right;CACAGCCTTGGACTAGCACACAGTCTCTCCGACCACCTGTGG|right;CACAGCCTTGGA|right;CACAGCCTTGGACTAGCACACAGTCT|right
+chr1	813538	813539	CTTTCTTA|left;CTTTCTTA|left
+chr1	813646	813647	TATAGTTATTAAAC|left;TAGGTTACACATTTTATGTCTAAAAATATAGTTATTAAAC|left;ATAGTTATTAAAC|left;TCTAAAAATATAGTTATTAAAC|left
+chr1	813648	813650	TATAGTTATTAAACGCC|left
+chr1	813648	813650	ACCCAAGAATGGATAAA|right;ACCCAAGAATGGATAAAA|right;ACCCAAGAATGGATA|right;ACCCAAGAATGGATA|right;ACCCAAGAA|right;ACCCAAGAATGGATAAAA|right;ACCCAAGAATGGATAAAA|right;ACCCAAGAATGGATAAATGAAGAAA|right;ACCCAAGAATGGATAAAAAAAGAAATCACAAGAG|right;ACCCAAGAATGGATAAAAGAAGAAATCACAAGAGA|right
+chr1	816788	816789	AGGCCACTGAATGTCACAG|left;TGAATGTCACAG|left
+chr1	816790	816791	ACACTAGCTGCAAACAAGGCCACTGAATGTCACAGC|left;CATCACACTAGCTGCAAACAAGGCCACTGAATGTCACAGC|left;CACAGC|left;ATGTCACAGC|left;CACAGC|left;ATGTCACAGC|left;CTGCAAACAAGGCCACTGAATGTCACAGC|left;AAACAAGGCCACTGAATGTCACAGC|left;AAACAAGGCCACAGAATGTCACAGC|left;CAAGGCCACTGAATGTCACAGC|left
+chr1	816792	816793	AGGTGGCTGGCATGTCT|right;AGGTGGCTGGCATGTCTGTGAA|right;AGGTGGCTGGCATGTCTGTGAAGGGC|right;AGGTGGCTGGCATGTCTGTGAAGGGCAG|right;AGGTGGCTGGCATGTCTGTGAAGGGCAGAAACT|right;AGGTGGCTGGCAT|right;AGGTGGCTGG|right;AGGTGGCTG|right;AGGTGGCTG|right;AGGTGGCTGGCATGTCTGTGAAGGGCAGAAACTGGGG|right;AGGTGGCTGGCATGTCTG|right;AGGTGGCTGGCATGTCTGTGAAGGGCAGAAACTGG|right;AGGTG|right;AGGTGGCT|right;AGGTGGC|right;AGGTG|right
+chr1	855228	855231	GATGCCTGTAGTCCCAGC|right;TTGCCTGTAGTCCCAGCTACTTGGGAGGCT|right;TGCCTGT|right;TGCCTGTA|right;TGCCTGT|right;TGCCTGTAGTCCCAGCTACTTGG|right;TGCCTGTAG|right;TGCCTGTAGTCCCA|right;TGCCTGTAGTCCCAGC|right;TGCCTGTAGTCCCAGC|right;TGCCTGTAGTCCCAGCT|right;TGCCTGTAGTCCCAGCTACT|right;TGCCTGTAGTC|right;TGCCTGTAGTCCCAGCTA|right;TGCCTGTAGTCCCAGCTACTTGGGAGG|right;TGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATG|right;TGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGC|right;TGCGTGTAGTCCCCGCTACTTGGGAGGCTG|right
+chr1	863640	863641	GGTCCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;GGTCCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;CCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;ACGCGGGCCAGGTCGAGGCTGC|left;GTCCCCTCCACAACCCGGGCCAGGTCCAGTCTGC|left;GGTCCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;CGGGCCAGGTCCAGGCTGC|left;CCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left;CAACCCGGGCCAGGTCCAGGCTGC|left;CCCGGTCCCCTCCACAACCCGGGCCAGGTCCAGGCTGC|left
+chr1	863642	863643	GGCCAGGTCCAGGCTGCA|left;GGCTGCA|left;GCCAGGTCCAGGCTGCA|left;CAGGCTGCA|left;GGCTGCA|left;TCCAGGCTGCA|left
+chr1	891136	891137	TTCTCAGGGTCCCCAAGAAGAAG|right;TTCTCA|right;TTTTCA|right;TTCTCAG|right;TTCTCAGG|right;TTCTCAGGGTCCCCA|right;TTCTCAGGGTCCCCAA|right;TTCTCAGGGTCCCCAAG|right;TTCTCAGGGTCCCCAAGAA|right;TTCTCTGGGTCCCCAAGAAG|right;TTCTCAGGGCCCCCAAGAAG|right;TTCTCAGGGTCCCCAAGAAG|right;TTCTCAGGGTCCCCAAGAGGA|right;TTCTCAAGGTCCCCAAGAAGAC|right;TTCTCAAGGTCCCCAAGAAGACGC|right;TTCTCAGGGTCCCCAAGAAGACGC|right;TTCTCAGGGTCCCCAAGAAGACGCT|right;TTCTCAGGGTCCCCAAGAAGACGCTGTC|right;TTCTCAGGGTCCCCAAGAAGACGCTGGCT|right;TTCTCAGGGTCCCCAAGAAGACGCTGGCTC|right;TTCTCAGGGTCCCCAAGAAGACGCTGGCTCTGTT|right;TTCTCAGGGTCCCTAAGAAGACGCTGGCTCTGTTG|right;TTCTCAGGGTCCCCAAGAAGACGCTGGCTCTGTTG|right;TTCTCAGGGTCCCCAAGAAGACGATGGGTCTGTTGCC|right
+chr1	891167	891168	CAAGT|left;GCTCCAACTGGCCCCAAGT|left;CAAGT|left;CAAGT|left
+chr1	891169	891171	GGCCGCTCCAACTGGCCCCAAGTG|left;TCCAACTGGCCCCAAGTG|left;TGGGGCCGCTCCAACTGGCCCCAAGTG|left;GGGGCCGCTCCAACTGGCCCCAAGTG|left;TGGGCCCAAGTG|left;TCCAACTGGCCCCAAGTG|left;CTCCAACTGGCCCCAAGTG|left;CTTCAACTGGCCCCAAGTG|left;CCAAATGGCCCCAAGTG|left;GCCGCTCCAACTGGCCCCAAGTG|left;CCAAGTG|left;GCTCCAAGTG|left;GAAAGAAGGTGGGGCCGCTCCAACTGGCCCCAAGTG|left;GGGACGCTCCAACCGGCCCCAAGTG|left;GGCCGCTACAACTGGCCCCAAGTG|left;TGGGGCCGCTCCAACTCGCCCCAAGTG|left;GGTGGGGCCGCTCCAACTGGCCCCAAGTG|left;CCGCTCCAACTGGCCCCAAGCGCT|left
+chr1	903613	903614	TGGAGACCAGATGCAGA|left;AGATGCAGA|left;TGGAGACCAGATGCAGA|left
+chr1	903615	903616	CTGGAGACCAGATGCAGAG|left;CAGATGCAGAG|left;GCAGAG|left;TGCAGAG|left;ACCAGATGCAGAG|left;GGTCCGGCGTCTTCTGGAGACCAGATGCAGAG|left;AGACCAGATGCAGAG|left
+chr1	903617	903618	GCTTCTGCAGGG|right;GCTTCTGCAGGGCCGTGCG|right;GCTTCTGCAGGGCCCTGC|right;GCTTCTGCAGGGTCCTGCC|right;GCTTCTGCATGGCCCTGCCCC|right;GCTTCTGCAGGGCGCTGCCCCA|right;GCTTCTGCAGGGCCCTGCCCCACGGCCCC|right;GCTTCTGCAGGGCCCTGCCCCACGGCCCCC|right;GCTTCTGCAGGGCCCTGCCCCACGGCCCCCTGGTGAGC|right;GCTTCTGCAGGG|right;GCTT|right;GCTTCTG|right;GCTTCTGCAG|right;GCTTCTGC|right
+chr1	915985	915986	TGCCCTGGCCAAGCTTAGCTGCCCCTGAGCAGGCCCA|left;TGAGCAGGCCCA|left
+chr1	915987	915988	AGGCCCAG|left;GCTGCCCCTGAGCAGGCCCAG|left
+chr1	915989	915990	CCCTGAGCAGGCCCAGG|left;AGCTGCCCCTGAGCAGGCCCAGG|left;GGCCCAGG|left;GAGCAGGCCCAGG|left;AGCTGCCCCTGAGCAGGCCCAGG|left;GCAGGCCCAGG|left;AGCTGCCCCTGAGCAGGCCCAGG|left
+chr1	915991	915992	AATGTGAACAGACAGACGCATGGCTTTCCCG|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCTTCTGCCT|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCTTCT|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCTTC|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCTT|right;AATGTGAACAGACAGACGCATGGCTTTCCCGGCCT|right;AATGTGAACAGACAGACGCATGGCTTTCCCG|right;AATGTGAACAGACAGAC|right;AATGTGAACAGAC|right;AATGTGAACAGACAGACGCATGGCTTT|right;AATGTGAACA|right;AATGTG|right;AATGTGAACAGACAGAC|right;AATGTGAACAGACAGAC|right
+chr1	938004	938005	CACGATGGCA|left;ATCGCA|left;ATGGCA|left;ATGGGAACAGCAAGCAAGACCTCACGATGGCA|left;GATGGCA|left
+chr1	938009	938010	GCCACACCCTCC|right;GCCACATCCTCCAC|right;GCCACACCCTCCACATCCGCAGA|right;GCCACACCCTCCACATCCGCAGAAGC|right
+chr1	958306	958307	ACTCCGTCTCAAAAAAGAAAAAAAAAAAGTAGAATCTCCT|left;AAAAAGTAGAATCTCCT|left;AAAAGAAAAAAAAAAAGTAGAATCTCCT|left;AGTAGAATCTCCT|left;GTAGAATCTCCT|left;AGTAGAATCTCCT|left;AAAGTAGAATCTCCT|left;AAAAAGTAGAATCTCCT|left;TAGAATCTCCT|left;AGTAGAATCTCCT|left
+chr1	958311	958312	AAGACCAGCCT|right;AAGACCAGCCTGGCCAACACAGTGAAACCCCATCT|right;AAGACCA|right;AAGACAA|right;AAGACCAGCCTG|right;AAGACCAGCCTGGCCAAC|right;AAGACCAGCCTGGCCAACACA|right;AAGACCAGCCTGGCCAACACAGTGAAAC|right;AAGACCAGCCTGGCCAACACAGTGAAACCCC|right;AAGACCAGCCTGGCCAACACAGTGAAACCCCATC|right;AAGACCAGCCTG|right