##fileformat=VCFv4.1
##fileDate=2014-05-05 12:07:11
##source=SoftSearch.pl
##reference=example.fasta
##Usage= SoftSearch.pl -l 5 -q 20 -r 5 -d 300 -m 5 -u 0 -s 6 -b Example.bam -f example.fasta -o output.vcf
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=EVENT,Number=1,Type=String,Description="ID of event associated to breakend">
##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakends">
##INFO=<ID=ISIZE,Number=.,Type=String,Description="Size of the SV">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##FORMAT=<ID=lSC,Number=1,Type=Integer,Description="Length of the longest soft clips supporting the BND">
##FORMAT=<ID=nSC,Number=1,Type=Integer,Description="Number of supporting soft-clips">
##FORMAT=<ID=uRP,Number=1,Type=Integer,Description="Number of unmated read pairs nearby Soft-Clips">
##FORMAT=<ID=levD_local,Number=1,Type=Float,Description="Levenstein distance between soft-clipped bases and the area around the original soft-clipped site">
##FORMAT=<ID=levD_distl,Number=1,Type=Float,Description="Levenstein distance between the soft-clipped bases and mate location">
##FORMAT=<ID=CTX,Number=1,Type=Integer,Description="Number of chromosomal translocations">
##FORMAT=<ID=DEL,Number=1,Type=Integer,Description="Number of reads supporting Large Deletions">
##FORMAT=<ID=INS,Number=1,Type=Integer,Description="Number of reads supporting Large insertions">
##FORMAT=<ID=NOV_INS,Number=1,Type=Integer,Description="Number of reads supporting novel sequence insertion">
##FORMAT=<ID=TDUP,Number=1,Type=Integer,Description="Number of reads supporting a tandem duplication">
##FORMAT=<ID=INV,Number=1,Type=Integer,Description="Number of reads supporting inversions">
##FORMAT=<ID=sDEL,Number=1,Type=Integer,Description="Number of reads supporting novel sequence insertion">
##INFO=<ID=NO_MATE_SC,Number=1,Type=Flag,Description="When there is no softclipping of the mate read location, an appromiate position is used">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Dummy value for maintaining VCF-Spec">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT