# HG changeset patch
# User plus91-technologies
# Date 1403156565 14400
# Node ID 2006814aa6f3489fa306f6836ba28b191a765fc6
# Parent  92d8479f1616d6c8c4863a9027ab798856f97b1e
Deleted selected files

diff -r 92d8479f1616 -r 2006814aa6f3 README 
--- a/README 	Mon Jun 09 09:58:47 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,36 +0,0 @@
-1.SoftSearch:
-
- --SoftSearch is a tools that uses soft-masked reads and discordant read pairs to identify structural variation(SV) in 
-   illumina next-generation sequencing data. 
-
- --It is a Integration of Multiple Sequence Features to Identify Breakpoints of Structural Variations.
-
- --Breakpoint is a place or time at which an interruption or change is made.
-
- --SoftSearch requires only two inputs: a BAM file of aligned reads and fasta file of the genome to which the reads were aligned.
-
- 	
-2.Setting for selecting fasta file from database.
-
- --Select fasta_indexes.loc file for that go to shed_tools/toolshed.g2.bx.psu.edu/repos/plus91-technologies/softsearch/
-   8578d978014c/softsearch/tool-data/
-
- --open the fasta_indexes.loc file and make changes like
-
-        <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
-
-        eg: hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
-
- --open shed_tool_data_table_conf.xml file and add following.
-
-   	<tables>
-	    <table name="fasta_indexes" comment_char="#">
-      	    <columns>value, dbkey, name, path</columns>
-       	    <file path="/path/to/fasta_indexes.loc" />
-  	    </table>
-	</tables>
-
-
-Notes:
-  --Need latest version of Samtools(version above 0.1.18) and perl installed on local system.
-