# HG changeset patch
# User plus91-technologies
# Date 1402063568 14400
# Node ID a18e157ce6e665f2d0292c85f30f3fec1a4dbf3e
# Parent  c82ca5cd3c3adeb8d83cd222d29d7c248dcf92e6
Uploaded

diff -r c82ca5cd3c3a -r a18e157ce6e6 README
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Fri Jun 06 10:06:08 2014 -0400
@@ -0,0 +1,32 @@
+SoftSearch Integrate through galaxy tool shed Guide
+
+1. set tool dependency dir path by removing comment from,
+    #tool_dependency_dir = path/to/directory/ from universe_wsgi.ini file 
+
+2. select galaxy main tool shed and type "softsearch_dependency" and install it.(it install binaries of softsearch).
+
+## select fasta file from database instead of history.
+
+Select fasta_indexes.loc file from local catch(from database).
+go to /galaxy-dist/tool-data/toolshed.g2.bx.psu.edu/repos/plus91-technologies-pvt-ltd/softsearch/e3609c8714fb/
+
+open the fasta_indexes.loc file and make changes like
+
+        <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
+
+        eg: hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
+
+open shed_tool_data_table_conf.xml file and add following.
+
+   	<tables>
+	    <table name="fasta_indexes" comment_char="#">
+      	    <columns>value, dbkey, name, path</columns>
+       	    <file path="/path/to/fasta_indexes.loc" />
+  	    </table>
+	</tables>
+
+
+
+
+Notes:
+- It is a dependent tool it require samtools(version above 0.1.18)