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1 <tool id="reformatPlatesLinearToTabular" name="Reformat Plates Linear To Tabular" version="1.0.0">
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2
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3 <command interpreter="perl">
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4 reformatPlatesLinearToTabular.pl $inputFile1 $outputFile1
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5 </command>
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6
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7 <inputs>
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8 <param format="tabular" name="inputFile1" type="data" label="Select the linear plates file"/>
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9 </inputs>
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10
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11 <outputs>
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12 <data format="tabular" name="outputFile1"/>
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13 </outputs>
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14
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15 <tests>
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16 <test>
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17 <param name="inputFile1" value="150615-HR-12015-01A.linear" />
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18 <output name="outputFile1" file="150615-HR-12015-01A.tabular" />
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19 </test>
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20 </tests>
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21
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22 <help>
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23
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24 .. class:: infomark
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25
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26 **What it does**
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27
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28 This program converts a plates table from a linear format to a tabular format.
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29
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30
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31 **Example**
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32
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33 If the plates table consisted of::
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34
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35 #Well Table_1 Table_2
A01 1654 6
A02 1719 8
A03 1624 19
A04 1518 6
A05 1587 12
A06 1517 8
A07 1638 9
A08 1733 7
A09 1617 6
A10 1722 8
A11 1665 7
A12 1536 9
A13 1636 13
A14 1691 8
A15 1773 8
A16 1554 12
A17 1651 13
A18 1670 7
A19 1748 7
A20 1541 7
A21 1549 9
A22 1550 8
A23 1615 6
A24 NA NA
B01 1553 5
B02 1588 8
B03 1557 6
B04 1786 7
B05 1635 6
B06 1679 6
B07 1533 6
B08 1720 7
B09 1562 6
B10 1577 6
B11 1713 6
B12 1526 6
B13 1559 7
B14 1706 7
B15 1690 6
B16 1707 6
B17 1651 6
B18 1687 7
B19 1584 6
B20 1638 6
B21 1722 6
B22 1562 6
B23 1696 9
B24 NA NA
C01 1579 6
C02 1568 14
C03 1684 8
C04 1501 12
C05 1546 22
C06 1718 9
C07 1569 11
C08 1532 8
C09 1530 11
C10 1572 12
C11 1517 12
C12 1573 8
C13 1518 21
C14 1585 16
C15 1595 17
C16 1505 9
C17 1593 10
C18 1735 7
C19 1548 8
C20 1534 10
C21 1512 6
C22 1577 17
C23 1519 19
C24 NA NA
D01 1551 7
D02 502 25
D03 1764 6
D04 1827 7
D05 1587 6
D06 1655 6
D07 1625 7
D08 1549 6
D09 1798 7
D10 1689 6
D11 1588 7
D12 1630 7
D13 1620 7
D14 1595 6
D15 1711 6
D16 1504 6
D17 1511 6
D18 1645 6
D19 1608 6
D20 1745 7
D21 1525 5
D22 1646 7
D23 674 25
D24 NA NA
E01 1809 7
E02 1624 8
E03 1791 6
E04 1556 17
E05 1530 7
E06 1604 10
E07 1610 14
E08 1620 11
E09 1506 7
E10 1609 15
E11 1620 7
E12 1531 19
E13 1534 8
E14 1723 7
E15 1600 15
E16 1480 25
E17 1714 7
E18 1574 9
E19 1658 8
E20 1634 7
E21 1632 10
E22 1671 8
E23 1639 8
E24 NA NA
F01 1804 6
F02 1815 6
F03 1644 7
F04 1618 6
F05 1686 6
F06 1523 8
F07 1501 6
F08 1587 7
F09 1502 6
F10 1742 6
F11 1621 6
F12 1638 8
F13 1640 7
F14 1588 6
F15 1542 6
F16 1720 6
F17 1503 7
F18 1788 6
F19 1571 6
F20 1547 5
F21 1653 8
F22 1752 6
F23 1687 7
F24 NA NA
G01 1540 6
G02 1567 22
G03 1587 7
G04 1564 18
G05 1671 9
G06 1552 18
G07 1555 7
G08 1571 11
G09 1693 7
G10 1692 7
G11 1617 11
G12 1590 7
G13 1589 16
G14 1546 8
G15 1648 8
G16 1583 10
G17 1538 17
G18 1560 9
G19 1553 6
G20 1598 9
G21 1561 16
G22 1523 11
G23 1599 13
G24 NA NA
H01 1700 6
H02 513 25
H03 1615 6
H04 1656 6
H05 1796 6
H06 1547 6
H07 1563 7
H08 1598 6
H09 1555 6
H10 1621 6
H11 1644 7
H12 1760 7
H13 1525 6
H14 1541 7
H15 1635 6
H16 1527 6
H17 1651 6
H18 1643 7
H19 1593 5
H20 1551 8
H21 1507 6
H22 1504 5
H23 522 25
H24 NA NA
I01 1604 7
I02 1591 9
I03 1626 11
I04 1585 11
I05 1522 17
I06 1546 9
I07 1520 6
I08 1582 9
I09 1664 9
I10 1589 10
I11 1508 10
I12 1505 23
I13 1577 7
I14 1657 12
I15 1560 7
I16 1561 12
I17 1597 14
I18 1505 13
I19 1646 9
I20 1579 15
I21 1602 13
I22 1621 12
I23 1583 6
I24 NA NA
J01 1520 6
J02 1577 17
J03 1692 8
J04 1510 5
J05 1691 7
J06 1747 7
J07 1744 7
J08 1724 8
J09 1666 6
J10 1645 6
J11 1637 6
J12 1706 7
J13 1672 6
J14 1522 7
J15 1535 5
J16 1528 6
J17 1569 6
J18 1592 8
J19 1812 7
J20 1806 7
J21 1525 6
J22 1675 7
J23 1540 22
J24 NA NA
K01 1626 6
K02 1513 6
K03 1624 7
K04 1530 7
K05 1650 11
K06 1610 11
K07 1644 11
K08 1522 11
K09 1544 14
K10 1532 7
K11 1229 25
K12 1520 11
K13 1540 9
K14 1630 10
K15 1668 8
K16 1519 17
K17 1657 8
K18 1509 21
K19 1543 7
K20 1513 12
K21 1564 7
K22 1660 10
K23 1632 6
K24 NA NA
L01 1676 7
L02 507 25
L03 1682 6
L04 1595 7
L05 1557 6
L06 1593 7
L07 1734 6
L08 1519 6
L09 1550 6
L10 1528 6
L11 1781 7
L12 1500 6
L13 1573 6
L14 1524 6
L15 1735 7
L16 1523 5
L17 1503 6
L18 1621 6
L19 1559 6
L20 1795 6
L21 1667 6
L22 1560 8
L23 420 25
L24 NA NA
M01 1625 6
M02 1548 19
M03 1538 25
M04 1731 7
M05 1607 14
M06 1637 7
M07 1544 9
M08 1703 9
M09 1617 6
M10 1635 8
M11 1528 16
M12 1532 6
M13 1583 7
M14 1555 8
M15 1551 9
M16 1580 15
M17 1655 6
M18 1662 7
M19 1591 8
M20 1758 8
M21 1623 8
M22 1597 6
M23 1561 18
M24 NA NA
N01 1660 6
N02 592 25
N03 1595 7
N04 1527 5
N05 1745 6
N06 1543 6
N07 1529 5
N08 1691 6
N09 1705 7
N10 1612 6
N11 1769 7
N12 1624 6
N13 1673 7
N14 1683 7
N15 1637 6
N16 1786 7
N17 1593 6
N18 1636 6
N19 1614 6
N20 1650 6
N21 1553 6
N22 1671 6
N23 628 25
N24 NA NA
O01 1692 6
O02 1701 8
O03 1611 10
O04 1370 25
O05 1537 10
O06 1538 14
O07 1582 8
O08 1515 11
O09 1587 6
O10 1582 6
O11 1660 10
O12 1544 10
O13 1544 8
O14 1603 9
O15 1592 12
O16 1518 11
O17 1606 6
O18 1565 10
O19 1617 6
O20 1543 18
O21 1649 7
O22 1710 8
O23 1788 7
O24 NA NA
P01 1818 7
P02 1611 5
P03 1736 7
P04 1642 6
P05 1557 5
P06 1606 6
P07 1558 6
P08 1627 6
P09 1579 6
P10 1733 6
P11 1520 6
P12 1558 7
P13 1804 7
P14 1630 6
P15 1576 6
P16 1740 7
P17 1578 6
P18 1544 6
P19 1692 6
P20 1560 6
P21 1552 6
P22 1790 7
P23 1537 6
P24 NA NA
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36
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37 Running the program will give the following output::
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38
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39
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40 Table_1
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41
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
A 1654 1719 1624 1518 1587 1517 1638 1733 1617 1722 1665 1536 1636 1691 1773 1554 1651 1670 1748 1541 1549 1550 1615
B 1553 1588 1557 1786 1635 1679 1533 1720 1562 1577 1713 1526 1559 1706 1690 1707 1651 1687 1584 1638 1722 1562 1696
C 1579 1568 1684 1501 1546 1718 1569 1532 1530 1572 1517 1573 1518 1585 1595 1505 1593 1735 1548 1534 1512 1577 1519
D 1551 502 1764 1827 1587 1655 1625 1549 1798 1689 1588 1630 1620 1595 1711 1504 1511 1645 1608 1745 1525 1646 674
E 1809 1624 1791 1556 1530 1604 1610 1620 1506 1609 1620 1531 1534 1723 1600 1480 1714 1574 1658 1634 1632 1671 1639
F 1804 1815 1644 1618 1686 1523 1501 1587 1502 1742 1621 1638 1640 1588 1542 1720 1503 1788 1571 1547 1653 1752 1687
G 1540 1567 1587 1564 1671 1552 1555 1571 1693 1692 1617 1590 1589 1546 1648 1583 1538 1560 1553 1598 1561 1523 1599
H 1700 513 1615 1656 1796 1547 1563 1598 1555 1621 1644 1760 1525 1541 1635 1527 1651 1643 1593 1551 1507 1504 522
I 1604 1591 1626 1585 1522 1546 1520 1582 1664 1589 1508 1505 1577 1657 1560 1561 1597 1505 1646 1579 1602 1621 1583
J 1520 1577 1692 1510 1691 1747 1744 1724 1666 1645 1637 1706 1672 1522 1535 1528 1569 1592 1812 1806 1525 1675 1540
K 1626 1513 1624 1530 1650 1610 1644 1522 1544 1532 1229 1520 1540 1630 1668 1519 1657 1509 1543 1513 1564 1660 1632
L 1676 507 1682 1595 1557 1593 1734 1519 1550 1528 1781 1500 1573 1524 1735 1523 1503 1621 1559 1795 1667 1560 420
M 1625 1548 1538 1731 1607 1637 1544 1703 1617 1635 1528 1532 1583 1555 1551 1580 1655 1662 1591 1758 1623 1597 1561
N 1660 592 1595 1527 1745 1543 1529 1691 1705 1612 1769 1624 1673 1683 1637 1786 1593 1636 1614 1650 1553 1671 628
O 1692 1701 1611 1370 1537 1538 1582 1515 1587 1582 1660 1544 1544 1603 1592 1518 1606 1565 1617 1543 1649 1710 1788
P 1818 1611 1736 1642 1557 1606 1558 1627 1579 1733 1520 1558 1804 1630 1576 1740 1578 1544 1692 1560 1552 1790 1537
Table_2
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
A 6 8 19 6 12 8 9 7 6 8 7 9 13 8 8 12 13 7 7 7 9 8 6
B 5 8 6 7 6 6 6 7 6 6 6 6 7 7 6 6 6 7 6 6 6 6 9
C 6 14 8 12 22 9 11 8 11 12 12 8 21 16 17 9 10 7 8 10 6 17 19
D 7 25 6 7 6 6 7 6 7 6 7 7 7 6 6 6 6 6 6 7 5 7 25
E 7 8 6 17 7 10 14 11 7 15 7 19 8 7 15 25 7 9 8 7 10 8 8
F 6 6 7 6 6 8 6 7 6 6 6 8 7 6 6 6 7 6 6 5 8 6 7
G 6 22 7 18 9 18 7 11 7 7 11 7 16 8 8 10 17 9 6 9 16 11 13
H 6 25 6 6 6 6 7 6 6 6 7 7 6 7 6 6 6 7 5 8 6 5 25
I 7 9 11 11 17 9 6 9 9 10 10 23 7 12 7 12 14 13 9 15 13 12 6
J 6 17 8 5 7 7 7 8 6 6 6 7 6 7 5 6 6 8 7 7 6 7 22
K 6 6 7 7 11 11 11 11 14 7 25 11 9 10 8 17 8 21 7 12 7 10 6
L 7 25 6 7 6 7 6 6 6 6 7 6 6 6 7 5 6 6 6 6 6 8 25
M 6 19 25 7 14 7 9 9 6 8 16 6 7 8 9 15 6 7 8 8 8 6 18
N 6 25 7 5 6 6 5 6 7 6 7 6 7 7 6 7 6 6 6 6 6 6 25
O 6 8 10 25 10 14 8 11 6 6 10 10 8 9 12 11 6 10 6 18 7 8 7
P 7 5 7 6 5 6 6 6 6 6 6 7 7 6 6 7 6 6 6 6 6 7 6
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42
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43 </help>
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44
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45 </tool>
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