Mercurial > repos > pmac > reformatplateslineartotabular
changeset 0:2aafe60f2fad draft default tip
Uploaded
author | pmac |
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date | Wed, 01 Jun 2016 03:55:27 -0400 |
parents | |
children | |
files | reformatPlatesLinearToTabular.pl reformatPlatesLinearToTabular.xml test-data/150615-HR-12015-01A.linear test-data/150615-HR-12015-01A.tabular |
diffstat | 4 files changed, 648 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/reformatPlatesLinearToTabular.pl Wed Jun 01 03:55:27 2016 -0400 @@ -0,0 +1,99 @@ +############################################################################### +# This script converts plate data from linear to tabular format. +# +# Args: +# input file: +# a text file containing a set of linear data in either 384/96 well format, +# +# Returns: +# For each input file, a tabular version of the data is returned +# in the same format typically generated from synergy or cellomics software. +# +# Author: jason ellul +############################################################################### + +use strict; +use warnings; +use IO::Handle; +use File::Temp qw/ tempfile tempdir /; +my $tdir = tempdir( CLEANUP => 0 ); + +# check to make sure having correct input and output files +my $usage = "usage: reformatPlatesTabularToLinear.pl [TABULAR.in] [TABULAR.out] \n"; +die $usage unless @ARGV == 2; + +#get the input arguments +my $linearPlateTable = $ARGV[0]; +my $tabularPlateTable = $ARGV[1]; + +#open the input files +open (INPUT, "<", $linearPlateTable) || die("Could not open file $linearPlateTable \n"); +open (OUTPUT1, ">", $tabularPlateTable) || die("Could not open file $tabularPlateTable \n"); + +#variable to store the name of the R script file +my $r_script; + +# R script to implement the calcualtion of q-values based on multiple simultaneous tests p-values +# construct an R script file and save it in a temp directory +chdir $tdir; +$r_script = "reformatPlatesLinearToTabular.r"; + +open(Rcmd,">", $r_script) or die "Cannot open $r_script \n\n"; +print Rcmd " + #options(show.error.messages = FALSE); + + #read the plates table + #tables <- read.table(\"$linearPlateTable\", sep=\"\\t\", head=T, comment=\"\"); + tablesTMP <- scan(\"$linearPlateTable\", sep=\"\\n\", what=\"character\", quiet = TRUE); + tmp <- strsplit(tablesTMP[1], \"\t\")[[1]]; + tables <- matrix(\"\", nrow=length(tablesTMP)-1, ncol=length(tmp)) + colnames(tables) <- tmp; + for(i in 2:length(tablesTMP)) { + tmp <- strsplit(tablesTMP[i], \"\t\")[[1]]; + if(length(tmp) > ncol(tables)) stop(paste(\"Error: Row\", i, \"has more columns than the header\")); + tables[i-1, 1:length(tmp)] <- tmp; + } + tables <- as.data.frame(tables, stringsAsFactors=F); + + if(ncol(tables) < 2) { + stop(\"The first column of the table must contain the well ID from A01 to either H12 or P24 depending on the number of wells.\") + } + + # check if the plate is in 96 or 384 well format + if(nrow(tables) == 96) { + nc <- 12; + nr <- 8; + } else if(nrow(tables) == 384) { + nc <- 24; + nr <- 16; + } else { + stop(\"Table is not for a 96 or 384 well plate. Please ensure you either have 96 or 384 rows plus a header.\") + } + + # for each table + for(i in 2:ncol(tables)) { + # write the name of the table + write(paste(colnames(tables)[i], sep=\"\"), file=\"$tabularPlateTable\", append=T); + write(\"\", file=\"$tabularPlateTable\", append=T); + # the column header + write(paste(\"\\t\", paste(1:nc, collapse=\"\\t\"), sep=\"\"), file=\"$tabularPlateTable\", append=T); + # replace any NAs with blank + if(any(is.na(tables[,i]))) tables[which(is.na(tables[,i])),i] <- \"\"; + # for each row print the values + curr <- 0; + for(j in LETTERS[1:nr]) { + write(paste(j, \"\\t\", paste(tables[(curr+1):(curr+nc), i], collapse=\"\\t\"), sep=\"\"), file=\"$tabularPlateTable\", append=T); + curr <- curr + nc; + } + # if we are at the last table do not add an extra line + if(i != ncol(tables)) write(\"\", file=\"$tabularPlateTable\", append=T); + } + #eof\n"; + +close Rcmd; + +system("R --no-restore --no-save --no-readline < $r_script > $r_script.out"); + +#close the input and output files +close(OUTPUT1); +close(INPUT);
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/reformatPlatesLinearToTabular.xml Wed Jun 01 03:55:27 2016 -0400 @@ -0,0 +1,45 @@ +<tool id="reformatPlatesLinearToTabular" name="Reformat Plates Linear To Tabular" version="1.0.0"> + + <command interpreter="perl"> + reformatPlatesLinearToTabular.pl $inputFile1 $outputFile1 + </command> + + <inputs> + <param format="tabular" name="inputFile1" type="data" label="Select the linear plates file"/> + </inputs> + + <outputs> + <data format="tabular" name="outputFile1"/> + </outputs> + + <tests> + <test> + <param name="inputFile1" value="150615-HR-12015-01A.linear" /> + <output name="outputFile1" file="150615-HR-12015-01A.tabular" /> + </test> + </tests> + + <help> + +.. class:: infomark + +**What it does** + +This program converts a plates table from a linear format to a tabular format. + + +**Example** + +If the plates table consisted of:: + + #Well Table_1 Table_2 A01 1654 6 A02 1719 8 A03 1624 19 A04 1518 6 A05 1587 12 A06 1517 8 A07 1638 9 A08 1733 7 A09 1617 6 A10 1722 8 A11 1665 7 A12 1536 9 A13 1636 13 A14 1691 8 A15 1773 8 A16 1554 12 A17 1651 13 A18 1670 7 A19 1748 7 A20 1541 7 A21 1549 9 A22 1550 8 A23 1615 6 A24 NA NA B01 1553 5 B02 1588 8 B03 1557 6 B04 1786 7 B05 1635 6 B06 1679 6 B07 1533 6 B08 1720 7 B09 1562 6 B10 1577 6 B11 1713 6 B12 1526 6 B13 1559 7 B14 1706 7 B15 1690 6 B16 1707 6 B17 1651 6 B18 1687 7 B19 1584 6 B20 1638 6 B21 1722 6 B22 1562 6 B23 1696 9 B24 NA NA C01 1579 6 C02 1568 14 C03 1684 8 C04 1501 12 C05 1546 22 C06 1718 9 C07 1569 11 C08 1532 8 C09 1530 11 C10 1572 12 C11 1517 12 C12 1573 8 C13 1518 21 C14 1585 16 C15 1595 17 C16 1505 9 C17 1593 10 C18 1735 7 C19 1548 8 C20 1534 10 C21 1512 6 C22 1577 17 C23 1519 19 C24 NA NA D01 1551 7 D02 502 25 D03 1764 6 D04 1827 7 D05 1587 6 D06 1655 6 D07 1625 7 D08 1549 6 D09 1798 7 D10 1689 6 D11 1588 7 D12 1630 7 D13 1620 7 D14 1595 6 D15 1711 6 D16 1504 6 D17 1511 6 D18 1645 6 D19 1608 6 D20 1745 7 D21 1525 5 D22 1646 7 D23 674 25 D24 NA NA E01 1809 7 E02 1624 8 E03 1791 6 E04 1556 17 E05 1530 7 E06 1604 10 E07 1610 14 E08 1620 11 E09 1506 7 E10 1609 15 E11 1620 7 E12 1531 19 E13 1534 8 E14 1723 7 E15 1600 15 E16 1480 25 E17 1714 7 E18 1574 9 E19 1658 8 E20 1634 7 E21 1632 10 E22 1671 8 E23 1639 8 E24 NA NA F01 1804 6 F02 1815 6 F03 1644 7 F04 1618 6 F05 1686 6 F06 1523 8 F07 1501 6 F08 1587 7 F09 1502 6 F10 1742 6 F11 1621 6 F12 1638 8 F13 1640 7 F14 1588 6 F15 1542 6 F16 1720 6 F17 1503 7 F18 1788 6 F19 1571 6 F20 1547 5 F21 1653 8 F22 1752 6 F23 1687 7 F24 NA NA G01 1540 6 G02 1567 22 G03 1587 7 G04 1564 18 G05 1671 9 G06 1552 18 G07 1555 7 G08 1571 11 G09 1693 7 G10 1692 7 G11 1617 11 G12 1590 7 G13 1589 16 G14 1546 8 G15 1648 8 G16 1583 10 G17 1538 17 G18 1560 9 G19 1553 6 G20 1598 9 G21 1561 16 G22 1523 11 G23 1599 13 G24 NA NA H01 1700 6 H02 513 25 H03 1615 6 H04 1656 6 H05 1796 6 H06 1547 6 H07 1563 7 H08 1598 6 H09 1555 6 H10 1621 6 H11 1644 7 H12 1760 7 H13 1525 6 H14 1541 7 H15 1635 6 H16 1527 6 H17 1651 6 H18 1643 7 H19 1593 5 H20 1551 8 H21 1507 6 H22 1504 5 H23 522 25 H24 NA NA I01 1604 7 I02 1591 9 I03 1626 11 I04 1585 11 I05 1522 17 I06 1546 9 I07 1520 6 I08 1582 9 I09 1664 9 I10 1589 10 I11 1508 10 I12 1505 23 I13 1577 7 I14 1657 12 I15 1560 7 I16 1561 12 I17 1597 14 I18 1505 13 I19 1646 9 I20 1579 15 I21 1602 13 I22 1621 12 I23 1583 6 I24 NA NA J01 1520 6 J02 1577 17 J03 1692 8 J04 1510 5 J05 1691 7 J06 1747 7 J07 1744 7 J08 1724 8 J09 1666 6 J10 1645 6 J11 1637 6 J12 1706 7 J13 1672 6 J14 1522 7 J15 1535 5 J16 1528 6 J17 1569 6 J18 1592 8 J19 1812 7 J20 1806 7 J21 1525 6 J22 1675 7 J23 1540 22 J24 NA NA K01 1626 6 K02 1513 6 K03 1624 7 K04 1530 7 K05 1650 11 K06 1610 11 K07 1644 11 K08 1522 11 K09 1544 14 K10 1532 7 K11 1229 25 K12 1520 11 K13 1540 9 K14 1630 10 K15 1668 8 K16 1519 17 K17 1657 8 K18 1509 21 K19 1543 7 K20 1513 12 K21 1564 7 K22 1660 10 K23 1632 6 K24 NA NA L01 1676 7 L02 507 25 L03 1682 6 L04 1595 7 L05 1557 6 L06 1593 7 L07 1734 6 L08 1519 6 L09 1550 6 L10 1528 6 L11 1781 7 L12 1500 6 L13 1573 6 L14 1524 6 L15 1735 7 L16 1523 5 L17 1503 6 L18 1621 6 L19 1559 6 L20 1795 6 L21 1667 6 L22 1560 8 L23 420 25 L24 NA NA M01 1625 6 M02 1548 19 M03 1538 25 M04 1731 7 M05 1607 14 M06 1637 7 M07 1544 9 M08 1703 9 M09 1617 6 M10 1635 8 M11 1528 16 M12 1532 6 M13 1583 7 M14 1555 8 M15 1551 9 M16 1580 15 M17 1655 6 M18 1662 7 M19 1591 8 M20 1758 8 M21 1623 8 M22 1597 6 M23 1561 18 M24 NA NA N01 1660 6 N02 592 25 N03 1595 7 N04 1527 5 N05 1745 6 N06 1543 6 N07 1529 5 N08 1691 6 N09 1705 7 N10 1612 6 N11 1769 7 N12 1624 6 N13 1673 7 N14 1683 7 N15 1637 6 N16 1786 7 N17 1593 6 N18 1636 6 N19 1614 6 N20 1650 6 N21 1553 6 N22 1671 6 N23 628 25 N24 NA NA O01 1692 6 O02 1701 8 O03 1611 10 O04 1370 25 O05 1537 10 O06 1538 14 O07 1582 8 O08 1515 11 O09 1587 6 O10 1582 6 O11 1660 10 O12 1544 10 O13 1544 8 O14 1603 9 O15 1592 12 O16 1518 11 O17 1606 6 O18 1565 10 O19 1617 6 O20 1543 18 O21 1649 7 O22 1710 8 O23 1788 7 O24 NA NA P01 1818 7 P02 1611 5 P03 1736 7 P04 1642 6 P05 1557 5 P06 1606 6 P07 1558 6 P08 1627 6 P09 1579 6 P10 1733 6 P11 1520 6 P12 1558 7 P13 1804 7 P14 1630 6 P15 1576 6 P16 1740 7 P17 1578 6 P18 1544 6 P19 1692 6 P20 1560 6 P21 1552 6 P22 1790 7 P23 1537 6 P24 NA NA + +Running the program will give the following output:: + + + Table_1 + 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 A 1654 1719 1624 1518 1587 1517 1638 1733 1617 1722 1665 1536 1636 1691 1773 1554 1651 1670 1748 1541 1549 1550 1615 B 1553 1588 1557 1786 1635 1679 1533 1720 1562 1577 1713 1526 1559 1706 1690 1707 1651 1687 1584 1638 1722 1562 1696 C 1579 1568 1684 1501 1546 1718 1569 1532 1530 1572 1517 1573 1518 1585 1595 1505 1593 1735 1548 1534 1512 1577 1519 D 1551 502 1764 1827 1587 1655 1625 1549 1798 1689 1588 1630 1620 1595 1711 1504 1511 1645 1608 1745 1525 1646 674 E 1809 1624 1791 1556 1530 1604 1610 1620 1506 1609 1620 1531 1534 1723 1600 1480 1714 1574 1658 1634 1632 1671 1639 F 1804 1815 1644 1618 1686 1523 1501 1587 1502 1742 1621 1638 1640 1588 1542 1720 1503 1788 1571 1547 1653 1752 1687 G 1540 1567 1587 1564 1671 1552 1555 1571 1693 1692 1617 1590 1589 1546 1648 1583 1538 1560 1553 1598 1561 1523 1599 H 1700 513 1615 1656 1796 1547 1563 1598 1555 1621 1644 1760 1525 1541 1635 1527 1651 1643 1593 1551 1507 1504 522 I 1604 1591 1626 1585 1522 1546 1520 1582 1664 1589 1508 1505 1577 1657 1560 1561 1597 1505 1646 1579 1602 1621 1583 J 1520 1577 1692 1510 1691 1747 1744 1724 1666 1645 1637 1706 1672 1522 1535 1528 1569 1592 1812 1806 1525 1675 1540 K 1626 1513 1624 1530 1650 1610 1644 1522 1544 1532 1229 1520 1540 1630 1668 1519 1657 1509 1543 1513 1564 1660 1632 L 1676 507 1682 1595 1557 1593 1734 1519 1550 1528 1781 1500 1573 1524 1735 1523 1503 1621 1559 1795 1667 1560 420 M 1625 1548 1538 1731 1607 1637 1544 1703 1617 1635 1528 1532 1583 1555 1551 1580 1655 1662 1591 1758 1623 1597 1561 N 1660 592 1595 1527 1745 1543 1529 1691 1705 1612 1769 1624 1673 1683 1637 1786 1593 1636 1614 1650 1553 1671 628 O 1692 1701 1611 1370 1537 1538 1582 1515 1587 1582 1660 1544 1544 1603 1592 1518 1606 1565 1617 1543 1649 1710 1788 P 1818 1611 1736 1642 1557 1606 1558 1627 1579 1733 1520 1558 1804 1630 1576 1740 1578 1544 1692 1560 1552 1790 1537 Table_2 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 A 6 8 19 6 12 8 9 7 6 8 7 9 13 8 8 12 13 7 7 7 9 8 6 B 5 8 6 7 6 6 6 7 6 6 6 6 7 7 6 6 6 7 6 6 6 6 9 C 6 14 8 12 22 9 11 8 11 12 12 8 21 16 17 9 10 7 8 10 6 17 19 D 7 25 6 7 6 6 7 6 7 6 7 7 7 6 6 6 6 6 6 7 5 7 25 E 7 8 6 17 7 10 14 11 7 15 7 19 8 7 15 25 7 9 8 7 10 8 8 F 6 6 7 6 6 8 6 7 6 6 6 8 7 6 6 6 7 6 6 5 8 6 7 G 6 22 7 18 9 18 7 11 7 7 11 7 16 8 8 10 17 9 6 9 16 11 13 H 6 25 6 6 6 6 7 6 6 6 7 7 6 7 6 6 6 7 5 8 6 5 25 I 7 9 11 11 17 9 6 9 9 10 10 23 7 12 7 12 14 13 9 15 13 12 6 J 6 17 8 5 7 7 7 8 6 6 6 7 6 7 5 6 6 8 7 7 6 7 22 K 6 6 7 7 11 11 11 11 14 7 25 11 9 10 8 17 8 21 7 12 7 10 6 L 7 25 6 7 6 7 6 6 6 6 7 6 6 6 7 5 6 6 6 6 6 8 25 M 6 19 25 7 14 7 9 9 6 8 16 6 7 8 9 15 6 7 8 8 8 6 18 N 6 25 7 5 6 6 5 6 7 6 7 6 7 7 6 7 6 6 6 6 6 6 25 O 6 8 10 25 10 14 8 11 6 6 10 10 8 9 12 11 6 10 6 18 7 8 7 P 7 5 7 6 5 6 6 6 6 6 6 7 7 6 6 7 6 6 6 6 6 7 6 + + </help> + +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/150615-HR-12015-01A.linear Wed Jun 01 03:55:27 2016 -0400 @@ -0,0 +1,385 @@ +#Well Table_1 Table_2 Table_3 Table_4 Table_5 Table_6 +A01 2215 8.88 55.62 2.57 2.91 78.76 +A02 2811 8.61 57.35 1.07 2.03 63.32 +A03 2226 10.96 70.4 0.54 2.41 79.41 +A04 2528 9.35 61.59 1.66 2.14 74.9 +A05 1827 11.87 73.78 0.66 2.27 79.31 +A06 2337 8.69 58.49 1.07 1.87 62.34 +A07 2233 9.7 63.41 1.07 2.32 77.48 +A08 2462 8.48 57.39 1.06 2.07 67.32 +A09 2790 9.5 62.83 1.65 2.52 80.57 +A10 2792 9.19 60.67 1.9 2.38 73.6 +A11 2547 9.51 61.76 1.33 2.8 84.6 +A12 2629 9.47 60.94 2.09 2.42 72.34 +A13 1655 11.8 71.24 0.85 2.3 71.88 +A14 2647 8.27 52.13 2.15 2.37 72.76 +A15 2300 11.5 72.17 0.57 2.68 86.26 +A16 2030 11.71 71.63 0.74 2.66 89.03 +A17 2124 9.78 63.89 1.13 2.45 81.13 +A18 2461 9.14 59.65 1.83 2.3 77.14 +A19 2273 8.68 57.85 0.97 2.32 69.57 +A20 2281 10.62 70.58 0.7 1.98 65.3 +A21 2412 10.49 69.86 0.46 2.07 70.27 +A22 1331 10.72 69.65 0.68 1.97 61.54 +A23 2245 9.88 66.24 0.4 2.17 66.33 +A24 2037 8.13 53.26 1.42 2.06 70.05 +B01 2184 10.31 65.29 0.87 2.33 72.4 +B02 2104 9.33 57.94 3.09 2.44 79.26 +B03 1639 11.13 69.68 0.55 2.03 67.42 +B04 2467 9.84 64.33 0.77 2.03 67.95 +B05 1818 11.75 75.25 0.66 1.97 68.96 +B06 1769 9.08 57.32 2.43 2.29 69.18 +B07 1654 12.22 75.7 0.6 2.14 75.29 +B08 2199 10.04 68.58 0.73 2.43 73.55 +B09 2043 8.74 59.03 1.22 1.96 57.65 +B10 1329 11.6 73.06 0.68 2.04 58.75 +B11 2533 7.31 47.06 3.83 3.01 95.3 +B12 2712 9.31 61.98 2.06 2.49 75.2 +B13 1824 10.83 68.42 1.54 2.45 80.09 +B14 2718 7.68 49.74 4.01 2.54 81.37 +B15 2443 10.4 68.81 1.02 2.64 91.33 +B16 2061 11.82 77.1 0.39 2.53 87.74 +B17 2088 10.83 70.69 0.62 2.22 74.12 +B18 2730 10.36 70.4 0.81 2.39 78.69 +B19 2279 8.09 54.28 1.14 1.98 61.28 +B20 2371 12.37 78.28 0.25 2.23 78.36 +B21 2114 10.49 71.85 0.85 2.32 73.66 +B22 2355 9.84 66.71 0.72 2.04 64.63 +B23 1154 11.75 72.1 0.35 2.35 65.16 +B24 1646 7.49 50.12 1.82 2.11 64.74 +C01 2356 9.67 64.43 1.02 2.07 61.55 +C02 2680 10.27 67.57 0.82 2.03 60.64 +C03 2305 8.51 55.88 1.56 1.87 56.38 +C04 2510 9.55 63.55 1 2.02 58.22 +C05 2650 10.23 67.96 0.3 1.95 59.48 +C06 2918 9.76 64.98 0.69 2.21 65.35 +C07 2618 8.28 55.39 1.26 2.42 68.98 +C08 2654 9.56 65.3 1.09 2.52 75.17 +C09 2828 8.44 57.39 1.34 2.21 63.59 +C10 2877 9.48 64.75 1.32 2.59 77.38 +C11 2441 9.78 65.38 1.47 2.38 73.63 +C12 2870 7.1 47.04 3.69 2.87 88.54 +C13 3202 9.02 59.93 1.72 2.43 78.2 +C14 2619 8.63 57.43 2.1 2.93 95.11 +C15 2716 8.82 58.73 1.18 2.46 78.45 +C16 2413 10.72 71.07 0.33 2.62 84.52 +C17 2893 8.18 56.14 1.52 2.8 83.32 +C18 2669 9.82 66.62 0.67 2.26 70.88 +C19 2272 10.81 71.79 0.79 2.1 68.8 +C20 2161 9.42 63.4 1.2 2.79 79.7 +C21 2677 8.75 59.62 0.78 2.04 62.52 +C22 2406 9.91 65 0.71 2.08 68.61 +C23 2494 7.54 49.44 2.33 2.25 63.14 +C24 1760 7.85 51.99 1.82 2.15 66.92 +D01 2206 7.2 45.01 2.77 1.41 36.44 +D02 1033 10.08 62.25 1.84 2.61 77.42 +D03 1744 7.58 49.14 3.04 2.4 70.59 +D04 2579 8.78 59.83 1.2 2.12 62.68 +D05 1921 9.41 64.08 0.94 2.29 70.86 +D06 2352 9.68 63.95 2.3 2.6 79.33 +D07 1844 8.86 59.06 2.11 2.76 85.21 +D08 2831 8.45 56.55 1.77 2.62 78 +D09 1803 9.59 63.67 1.22 2.81 84.73 +D10 2531 9.03 59.9 1.78 2.64 75.75 +D11 1942 7.37 48.51 3.24 3.1 95.33 +D12 2653 9.72 66.34 1.43 2.77 84.49 +D13 2624 6.77 43.52 4.54 3.06 101.35 +D14 2777 6.68 43.03 5.47 3.36 106.95 +D15 2523 8.53 58.7 1.43 3.13 101.22 +D16 2532 9.9 66.11 0.87 2.96 89.01 +D17 2243 9.92 66.79 0.76 3.15 105.74 +D18 2653 11.31 76.1 0.45 2.67 85.7 +D19 1806 11.24 73.26 0.44 2.77 90.06 +D20 2502 11.17 74.5 0.48 2.58 76.4 +D21 2355 9.81 67.22 0.85 2.69 88.68 +D22 2036 11.95 77.65 0.29 2.54 82.78 +D23 4 19.75 100 0 1.5 74.25 +D24 2056 7.06 45.82 1.9 2.27 76.56 +E01 1953 7.89 52.02 2.36 2.09 64.14 +E02 58 10.38 67.24 6.9 2.34 81.33 +E03 1429 11 70.89 0.91 2.09 65.5 +E04 2419 9.41 61.06 1.2 2.4 69.87 +E05 2326 9.41 62.64 1.25 2.36 69.72 +E06 2281 9.32 61.03 2.59 2.88 89.16 +E07 2524 7.92 52.61 2.73 2.63 78 +E08 2444 9.17 62.19 1.51 2.8 84.21 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/150615-HR-12015-01A.tabular Wed Jun 01 03:55:27 2016 -0400 @@ -0,0 +1,119 @@ +Table_1 + + 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 +A 2215 2811 2226 2528 1827 2337 2233 2462 2790 2792 2547 2629 1655 2647 2300 2030 2124 2461 2273 2281 2412 1331 2245 2037 +B 2184 2104 1639 2467 1818 1769 1654 2199 2043 1329 2533 2712 1824 2718 2443 2061 2088 2730 2279 2371 2114 2355 1154 1646 +C 2356 2680 2305 2510 2650 2918 2618 2654 2828 2877 2441 2870 3202 2619 2716 2413 2893 2669 2272 2161 2677 2406 2494 1760 +D 2206 1033 1744 2579 1921 2352 1844 2831 1803 2531 1942 2653 2624 2777 2523 2532 2243 2653 1806 2502 2355 2036 4 2056 +E 1953 58 1429 2419 2326 2281 2524 2444 2402 2470 2387 2812 2121 2467 1932 2207 866 1665 1668 1942 2717 1995 2686 1711 +F 2647 1866 2327 1831 2081 2360 2465 2561 2242 2595 2601 2075 2452 2506 2228 2869 1322 2712 2623 2320 2528 1797 1933 1759 +G 2715 2567 2346 2536 2157 2549 2368 2798 2595 3309 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59.73 53.58 56.58 57.69 49.86 56.17 67.63