# HG changeset patch
# User portiahollyoak
# Date 1463734585 14400
# Node ID 021a0f7ab3f68dd94243539cc064caa5923c44a6
# Parent  f65530d07350b6573d621b53f62ff0522d0cd002
planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990

diff -r f65530d07350 -r 021a0f7ab3f6 test-data/README
--- a/test-data/README	Tue May 17 04:35:44 2016 -0400
+++ b/test-data/README	Fri May 20 04:56:25 2016 -0400
@@ -1,10 +1,12 @@
 This is a collection of test data to be used with breakdancer. It consists of:
 
 an alignment file
-a output bed file
+an output bed file
 
-The details for the alignment file to be put into breakdancer are:
+The input variables for the alignment file to be put into breakdancer are:
 mean:227
 standard deviation:98
 read length:125	
 sample:X_10000000_Hum1
+
+All other variables are to be kept as defaults.
diff -r f65530d07350 -r 021a0f7ab3f6 test-data/breakdancer_config_X_100000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/breakdancer_config_X_100000	Fri May 20 04:56:25 2016 -0400
@@ -0,0 +1,1 @@
+map:../HUM_BAM_dm6fasta/Hum1.bwa.bam	mean:227	std:98	readlen:125	sample:HUM1	exe:samtools view