Mercurial > repos > ppericard > mixomics_blocksplsda

comparison mixomics_blocksplsda.xml @ 5:1ee8d2c20c0a draft

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planemo upload for repository https://github.com/bilille/galaxy-mixomics-blocksplsda commit 25773bd7a90072f9782df823969b282e4fe29252
author ppericard
date Tue, 10 Mar 2020 06:27:02 -0400
parents b0ab97ffc2a1
children
comparison
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4:b0ab97ffc2a1 5:1ee8d2c20c0a
1 <tool id="mixomics_blocksplsda" name="mixOmics block.splsda" version="0.3.0" profile="16.04" workflow_compatible="true"> 1 <tool id="mixomics_blocksplsda" name="mixOmics block.splsda" version="0.4.0" profile="16.04" workflow_compatible="true">
2 2
3 <description>performs N-integration and feature selection with Projection to Latent Structures models (PLS) with sparse Discriminant Analysis</description> 3 <description>performs N-integration and feature selection with Projection to Latent Structures models (PLS) with sparse Discriminant Analysis</description>
4 4
5 <requirements> 5 <requirements>
6 <requirement type="package" version="6.8">bioconductor-mixomics</requirement> 6 <requirement type="package" version="6.8">bioconductor-mixomics</requirement>
29 #end for 29 #end for
30 --sample_metadata_in ${sample_metadata_in} 30 --sample_metadata_in ${sample_metadata_in}
31 --sample_description_col ${sample_description_col} 31 --sample_description_col ${sample_description_col}
32 --ncomp ${ncomp} 32 --ncomp ${ncomp}
33 ${correlation} 33 ${correlation}
34 --scheme ${adv.scheme} 34 ##--scheme ${adv.scheme}
35 --mode ${adv.mode} 35 ##--mode ${adv.mode}
36 --maxiter ${adv.maxiter} 36 --maxiter ${adv.maxiter}
37 ${adv.scale} 37 ##${adv.scale}
38 --init ${adv.init} 38 --scale ## always activated hidden param
39 --tol ${adv.tol} 39 ##--init ${adv.init}
40 ${adv.nearzerovar} 40 ##--tol ${adv.tol}
41 ##${adv.nearzerovar}
41 --rdata_out ${rdata_out} 42 --rdata_out ${rdata_out}
42 --sample_metadata_out ${sample_metadata_out} 43 --sample_metadata_out ${sample_metadata_out}
43 --variable_metadata_outdir outdir 44 --variable_metadata_outdir outdir
44 ]]> 45 ]]>
45 </command> 46 </command>
93 <option value="svd.single" >svd.single</option> 94 <option value="svd.single" >svd.single</option>
94 </param> 95 </param>
95 <param name="tol" type="float" value="1e-06" min="0" 96 <param name="tol" type="float" value="1e-06" min="0"
96 label="Convergence stopping value" 97 label="Convergence stopping value"
97 help="[tol]" /> 98 help="[tol]" />
98 <param name="nearzerovar" type="boolean" truevalue="-\-nearzerovar" falsevalue="" checked="false" 99 <param name="nearzerovar" type="boolean" truevalue="-\-nearzerovar" falsevalue="" checked="true"
99 label="Should be set to TRUE in particular for data with many zero values" /> --> 100 label="Should be set to TRUE in particular for data with many zero values" /> -->
100 </section> 101 </section>
101 </inputs> 102 </inputs>
102 103
103 <outputs> 104 <outputs>