Mercurial > repos > ppericard > mixomics_blocksplsda
diff matCor_addVar.xml @ 3:0a3c83f2197a draft
planemo upload for repository https://github.com/bilille/galaxy-mixomics-blocksplsda commit 24b8259494ac7ab10cbd1f9ee991f455a7507590-dirty
author | ppericard |
---|---|
date | Fri, 25 Oct 2019 07:10:59 -0400 |
parents | |
children | b0ab97ffc2a1 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/matCor_addVar.xml Fri Oct 25 07:10:59 2019 -0400 @@ -0,0 +1,43 @@ +<tool id="matCor_addVar" name="matCor_addVar" version="0.2.0" profile="16.04" workflow_compatible="true"> + + <description></description> + + <requirements> + <requirement type="package" version="6.8">bioconductor-mixomics</requirement> + <requirement type="package" version="2.0">r-argparse</requirement> + </requirements> + + <stdio> + <!-- <exit_code range="1:" level="fatal" /> --> + </stdio> + + <command detect_errors="aggressive"> + <![CDATA[ + Rscript + ${__tool_directory__}/matCor_addVar_wrapper.R + --input_rdata ${input_rdata} + --cutoff_comp ${cutoff_comp} + --mat_block_Y_file ${mat_block_Y} + --output_rdata ${output_rdata} + --output_blocks_comb ${output_blocks_comb} + ]]> + </command> + + <inputs> + <param name="input_rdata" type="data" format="rdata" label="Input RData file from block.SPLSDA"/> + <param name="cutoff_comp" type="float" value="0.8" min="0" max="1" label="" help="" /> + <param name="mat_block_Y" type="data" format="tabular" label="Matrix Block Y" /> + </inputs> + + <outputs> + <data name="output_rdata" format="rdata" label="${tool.name}_output.rdata" /> + <data name="output_blocks_comb" format="tabular" label="${tool.name}_blocks_comb.tsv" /> + </outputs> + + <tests> + </tests> + + <help> + </help> + +</tool> \ No newline at end of file