Mercurial > repos > ppericard > viscorvar

annotate mixomics_plotindiv.xml @ 0:d0b77b926863 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
author ppericard
date Tue, 23 Jun 2020 19:57:35 -0400
parents
children e93350dc99f1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
1 <tool id="mixomics_plotindiv" name="mixOmics plotIndiv" version="1.0" profile="16.04" workflow_compatible="true">
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
2
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
3 <description>provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA)</description>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
4
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
5 <requirements>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
6 <requirement type="package" version="6.12">bioconductor-mixomics</requirement>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
7 <requirement type="package" version="2.0">r-argparse</requirement>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
8 </requirements>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
9
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
10 <stdio>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
11 <!-- <exit_code range="1:" level="fatal" /> -->
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
12 </stdio>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
13
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
14 <command detect_errors="aggressive">
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
15 <![CDATA[
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
16 Rscript
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
17 ${__tool_directory__}/mixomics_plotindiv_script.R
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
18 --input_rdata $input_rdata
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
19 $adv.legend
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
20 $adv.ellipse
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
21 --output_pdf $output_pdf
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
22 ]]>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
23 </command>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
24
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
25 <inputs>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
26 <param name="input_rdata" type="data" format="rdata"
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
27 label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)"
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
28 help="This is the RData output file from the block.splsda function." />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
29 <section name="adv" title="Advanced Options" expanded="false">
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
30 <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue=""
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
31 label="Plot legend" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
32 <param name="ellipse" type="boolean" checked="true" truevalue="--ellipse" falsevalue=""
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
33 label="Plot ellipse plots" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
34 </section>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
35 </inputs>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
36
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
37 <outputs>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
38 <data name="output_pdf" format="pdf" label="plotIndiv.pdf" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
39 </outputs>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
40
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
41 <tests>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
42 <test>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
43 <param name="input_rdata" value="out_rdata.rdata" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
44 <output name="output_pdf" value="out_plotIndiv.pdf" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
45 </test>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
46 </tests>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
47
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
48 <help>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
49 <![CDATA[
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
50 .. class:: infomark
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
51
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
52 **Authors** Pierre Pericard (pierre.pericard@pasteur-lille.fr)
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
53
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
54 ---------------------------------------------------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
55
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
56 .. class:: infomark
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
57
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
58 **Please cite**
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
59
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
60 Rohart F, Gautier B, Singh A, Lê Cao KA (2017) mixOmics: An R package for ‘omics feature selection and multiple data integration.
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
61 PLOS Computational Biology 13(11): e1005752. https://doi.org/10.1371/journal.pcbi.1005752
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
62
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
63 ---------------------------------------------------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
64
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
65 ==================
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
66 mixOmics plotIndiv
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
67 ==================
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
68
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
69 -----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
70 Description
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
71 -----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
72
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
73 The plotIndiv function is part of the mixOmics package for exploration and integration of Omics datasets.
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
74 Provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA).
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
75
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
76 -----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
77 Input files
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
78 -----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
79
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
80 +-------------------------------+------------+
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
81 | Parameter : num + label | Format |
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
82 +===============================+============+
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
83 | 1 : Rdata block.splsda output | Rdata |
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
84 +-------------------------------+------------+
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
85
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
86 ----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
87 Parameters
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
88 ----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
89
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
90 Advanced options:
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
91 =================
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
92
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
93 Plot legend
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
94
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
95 Plot ellipse plots
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
96
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
97 ------------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
98 Output files
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
99 ------------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
100
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
101 plotIndiv.pdf
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
102 A pdf file with scatter plots for individuals
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
103
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
104 ]]>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
105 </help>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
106
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
107 <citations>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
108 <citation type="doi">10.1371/journal.pcbi.1005752</citation>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
109 </citations>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
110
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
111 </tool>