Mercurial > repos > ppericard > viscorvar

annotate viscorvar_computematsimilarity.xml @ 3:df8428358b7f draft

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit d930da2982ffb689ba4fdf7599c8971f8c52339d"
author ppericard
date Fri, 23 Oct 2020 11:26:18 +0000
parents c8533e9298e5
children d4e9f7546dfa
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1 <tool id="viscorvar_computematsimilarity" name="visCorVar computeMatSimilarity" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true">
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3 <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description>
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5 <macros>
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6 <import>macros.xml</import>
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7 <import>macros_viscorvar.xml</import>
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8 </macros>
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10 <expand macro="requirements"/>
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11 <expand macro="stdio"/>
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13 <command detect_errors="aggressive"><![CDATA[
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15 @COMMAND_RSCRIPT@/viscorvar_computematsimilarity.R
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17 --input_rdata ${input_rdata}
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19 --output_rdata ${output_rdata}
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21 @COMMAND_LOG_EXIT@
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23 ]]></command>
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25 <inputs>
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26 <param name="input_rdata" type="data" format="rdata"
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27 label="Input RData file"
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28 help="output RData file from matCorAddVar"/>
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29 </inputs>
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31 <outputs>
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32 <data name="output_rdata" format="rdata" label="${tool.name}_output.RData" />
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33 </outputs>
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35 <tests>
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36 </tests>
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38 <help><![CDATA[
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40 @HELP_AUTHORS@
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42 ==============================
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43 visCorVar computeMatSimilarity
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44 ==============================
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46 -----------
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47 Description
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48 -----------
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50 Bla bla...
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52 -----------------
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53 Workflow position
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54 -----------------
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56 **Upstream tools**
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58 ======================== ===================================== ========
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59 Name Output file Format
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60 ======================== ===================================== ========
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61 visCorVar.matCorAddVar viscorvar_matcoraddvar_output.RData rdata
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62 ======================== ===================================== ========
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64 **Downstream tools**
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66 ====================== ============================================= ========
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67 Name Output file Format
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68 ====================== ============================================= ========
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69 visCorVar.networkVar viscorvar_computematsimilarity_output.RData rdata
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70 ====================== ============================================= ========
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72 ---------------------------------------------------
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74 -----------
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75 Input files
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76 -----------
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78 +------------------------------------------+------------+
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79 | Parameter : num + label | Format |
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80 +==========================================+============+
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81 | 1 : Rdata visCorVar.matCorAddVar output | Rdata |
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82 +------------------------------------------+------------+
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84 ----------
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85 Parameters
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86 ----------
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88 @HELP_MANUAL@
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90 ------------
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91 Output files
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92 ------------
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93
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94 viscorvar_computematsimilarity_output.RData
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95 RData output
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97 ]]></help>
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99 <expand macro="citations" />
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100
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101 </tool>