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comparison viscorvar_computematsimilarity.xml @ 2:c8533e9298e5 draft

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
author ppericard
date Fri, 23 Oct 2020 10:15:56 +0000
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1:e93350dc99f1 2:c8533e9298e5
1 <tool id="viscorvar_computematsimilarity" name="visCorVar computeMatSimilarity" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true">
2
3 <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description>
4
5 <macros>
6 <import>macros.xml</import>
7 <import>macros_viscorvar.xml</import>
8 </macros>
9
10 <expand macro="requirements"/>
11 <expand macro="stdio"/>
12
13 <command detect_errors="aggressive"><![CDATA[
14
15 @COMMAND_RSCRIPT@/viscorvar_computematsimilarity.R
16
17 --input_rdata ${input_rdata}
18
19 --output_rdata ${output_rdata}
20
21 @COMMAND_LOG_EXIT@
22
23 ]]></command>
24
25 <inputs>
26 <param name="input_rdata" type="data" format="rdata"
27 label="Input RData file"
28 help="output RData file from matCorAddVar"/>
29 </inputs>
30
31 <outputs>
32 <data name="output_rdata" format="rdata" label="${tool.name}_output.RData" />
33 </outputs>
34
35 <tests>
36 </tests>
37
38 <help><![CDATA[
39
40 @HELP_AUTHORS@
41
42 ==============================
43 visCorVar computeMatSimilarity
44 ==============================
45
46 -----------
47 Description
48 -----------
49
50 Bla bla...
51
52 -----------------
53 Workflow position
54 -----------------
55
56 **Upstream tools**
57
58 ======================== ===================================== ========
59 Name Output file Format
60 ======================== ===================================== ========
61 visCorVar.matCorAddVar viscorvar_matcoraddvar_output.RData rdata
62 ======================== ===================================== ========
63
64 **Downstream tools**
65
66 ====================== ============================================= ========
67 Name Output file Format
68 ====================== ============================================= ========
69 visCorVar.networkVar viscorvar_computematsimilarity_output.RData rdata
70 ====================== ============================================= ========
71
72 ---------------------------------------------------
73
74 -----------
75 Input files
76 -----------
77
78 +------------------------------------------+------------+
79 | Parameter : num + label | Format |
80 +==========================================+============+
81 | 1 : Rdata visCorVar.matCorAddVar output | Rdata |
82 +------------------------------------------+------------+
83
84 ----------
85 Parameters
86 ----------
87
88 @HELP_MANUAL@
89
90 ------------
91 Output files
92 ------------
93
94 viscorvar_computematsimilarity_output.RData
95 RData output
96
97 ]]></help>
98
99 <expand macro="citations" />
100
101 </tool>