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comparison mixomics_plotindiv.xml @ 4:d4e9f7546dfa draft

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
author ppericard
date Tue, 17 Nov 2020 13:01:44 +0000
parents c8533e9298e5
children 88c1fd2ac110
comparison
equal deleted inserted replaced
3:df8428358b7f 4:d4e9f7546dfa
1 <tool id="mixomics_plotindiv" name="mixOmics plotIndiv" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true"> 1 <tool id="mixomics_plotindiv" name="mixOmics plotIndiv" version="@TOOL_VERSION@+galaxy2" profile="16.04" workflow_compatible="true">
2 2
3 <description>provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA)</description> 3 <description>provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA)</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
19 $adv.legend 19 $adv.legend
20 $adv.ellipse 20 $adv.ellipse
21 21
22 --output_pdf $output_pdf 22 --output_pdf $output_pdf
23 23
24 @COMMAND_LOG_EXIT@
25
26 ]]></command> 24 ]]></command>
27 25
28 <inputs> 26 <inputs>
29 <param name="input_rdata" type="data" format="rdata" 27 <param name="input_rdata" type="data" format="rdata"
30 label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)" 28 label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)"
31 help="This is the RData output file from the block.splsda function." /> 29 help="this is the RData output file from the block.splsda function" />
32 <section name="adv" title="Advanced Options" expanded="false"> 30 <section name="adv" title="Advanced Options" expanded="false">
33 <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue="" 31 <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue=""
34 label="Plot legend" /> 32 label="Plot legend" />
35 <param name="ellipse" type="boolean" checked="true" truevalue="--ellipse" falsevalue="" 33 <param name="ellipse" type="boolean" checked="true" truevalue="--ellipse" falsevalue=""
36 label="Plot ellipse plots" /> 34 label="Plot ellipse plots" />
58 56
59 ----------- 57 -----------
60 Description 58 Description
61 ----------- 59 -----------
62 60
63 The plotIndiv function is part of the mixOmics package for exploration and integration of Omics datasets. 61 This tool allows visualizing the samples on a two dimensionnal graphic. An effect can be visualized along the abscissa axis and along the ordinate axis.
64 Provides scatter plots for individuals (experimental units) representation in (sparse)(I)PCA,(regularized)CCA, (sparse)PLS(DA) and (sparse)(R)GCCA(DA).
65 62
66 ----------------- 63 -----------------
67 Workflow position 64 Workflow position
68 ----------------- 65 -----------------
69 66