Mercurial > repos > ppericard > viscorvar

comparison viscorvar_networkvar.xml @ 4:d4e9f7546dfa draft

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 579dc54316e8ede493f86f434a87d3d7b692b023"
author ppericard
date Tue, 17 Nov 2020 13:01:44 +0000
parents df8428358b7f
children 88c1fd2ac110
comparison
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3:df8428358b7f 4:d4e9f7546dfa
1 <tool id="viscorvar_networkvar" name="visCorVar networkVar" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true"> 1 <tool id="viscorvar_networkvar" name="visCorVar networkVar" version="@TOOL_VERSION@+galaxy0" profile="16.04" workflow_compatible="true">
2 2
3 <description>creates a network between selected variables of datasets and the response variables. In the network, the similarity between two variables is associated with the link between these two variables.</description> 3 <description>creates a network between selected variables of datasets and the response variables. In the network, the similarity between two variables is associated with the link between these two variables.</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
21 --output_graph ${output_graph} 21 --output_graph ${output_graph}
22 22
23 @COMMAND_LOG_EXIT@ 23 @COMMAND_LOG_EXIT@
24 24
25 ]]></command> 25 ]]></command>
26 26
27 <inputs> 27 <inputs>
28 <param name="mat_similarity_rdata" type="data" format="rdata" 28 <param name="mat_similarity_rdata" type="data" format="rdata"
29 label="Input computeMatSimilarity RData file" 29 label="this is the RData output file from the computeMatSimilarity function"
30 help="output RData file from computeMatSimilarity"/> 30 help="output RData file from computeMatSimilarity"/>
31 <param name="var_list_file" type="data" format="tabular" 31 <param name="var_list_file" type="data" format="tabular"
32 label="Variables list file" 32 label="Variables list file"
33 help="selected variables output tabular file from circleCor"/> 33 help="selected variables output tabular file from circleCor"/>
34 34
69 69
70 ----------- 70 -----------
71 Description 71 Description
72 ----------- 72 -----------
73 73
74 Bla bla... 74 This tool creates a network of correlated variables for omics datasets. The determination of
75 the omics datasets which can be visualized is made by the tool matCorAddVar. This network can
76 be exported to graphml format and visualized with Cytoscape. The link between two variables
77 is associated with the correlation between two variables : a threshold can be used in
78 Cytoscape to get a network of variables whose correlation is greater than this threshold
79 in absolute value.
75 80
76 ----------------- 81 -----------------
77 Workflow position 82 Workflow position
78 ----------------- 83 -----------------
79 84