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comparison mixomics_blocksplsda.xml @ 1:e93350dc99f1 draft

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 1eda261d4fe137d6e8806b0c6af7eaf12d11ac95"
author ppericard
date Thu, 15 Oct 2020 12:22:25 +0000
parents d0b77b926863
children c8533e9298e5
comparison
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0:d0b77b926863 1:e93350dc99f1
1 <tool id="mixomics_blocksplsda" name="mixOmics block.splsda" version="1.0" profile="16.04" workflow_compatible="true"> 1 <tool id="mixomics_blocksplsda" name="mixOmics block.splsda" version="6.12+galaxy0" profile="16.04" workflow_compatible="true">
2 2
3 <description>performs N-integration and feature selection with Projection to Latent Structures models (PLS) with sparse Discriminant Analysis</description> 3 <description>performs N-integration and feature selection with Projection to Latent Structures models (PLS) with sparse Discriminant Analysis</description>
4 4
5 <requirements> 5 <requirements>
6 <requirement type="package" version="6.12">bioconductor-mixomics</requirement> 6 <requirement type="package" version="6.12">bioconductor-mixomics</requirement>
39 ${adv.check_missing_values} 39 ${adv.check_missing_values}
40 ##--init ${adv.init} 40 ##--init ${adv.init}
41 ##--tol ${adv.tol} 41 ##--tol ${adv.tol}
42 ##${adv.nearzerovar} 42 ##${adv.nearzerovar}
43 --rdata_out ${rdata_out} 43 --rdata_out ${rdata_out}
44 --sample_metadata_out ${sample_metadata_out} 44 ##--sample_metadata_out ${sample_metadata_out}
45 --variable_metadata_outdir outdir 45 --variable_metadata_outdir outdir
46 ]]> 46 ]]>
47 </command> 47 </command>
48 48
49 <inputs> 49 <inputs>
105 </section> 105 </section>
106 </inputs> 106 </inputs>
107 107
108 <outputs> 108 <outputs>
109 <data name="rdata_out" format="rdata" label="${tool.name}_output.rdata" /> 109 <data name="rdata_out" format="rdata" label="${tool.name}_output.rdata" />
110 <data name="sample_metadata_out" format="tabular" 110 <!-- <data name="sample_metadata_out" format="tabular"
111 label="${tool.name}_${sample_metadata_in.name}" /> 111 label="${tool.name}_${sample_metadata_in.name}" /> -->
112 <collection name="blocks_output" type="list" label="${tool.name}_blocks_output"> 112 <collection name="blocks_output" type="list" label="${tool.name}_blocks_output">
113 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.tsv" 113 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.tsv"
114 directory="outdir" format="tabular" /> 114 directory="outdir" format="tabular" />
115 </collection> 115 </collection>
116 </outputs> 116 </outputs>