Mercurial > repos > ppericard > viscorvar

comparison mixomics_blocksplsda.R @ 5:88c1fd2ac110 draft default tip

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 21d09ff286a496ff475f32626d88dd42423ae663"
author ppericard
date Tue, 07 Sep 2021 10:40:08 +0000
parents c8533e9298e5
children
comparison
equal deleted inserted replaced
4:d4e9f7546dfa 5:88c1fd2ac110
20 parser$add_argument('--ncomp', dest='ncomp', type='integer', default=2, 20 parser$add_argument('--ncomp', dest='ncomp', type='integer', default=2,
21 help="Number of components to include in the model") 21 help="Number of components to include in the model")
22 parser$add_argument('--correlation', dest='correlation', action="store_true", 22 parser$add_argument('--correlation', dest='correlation', action="store_true",
23 help="Add correlation between all blocks") 23 help="Add correlation between all blocks")
24 parser$add_argument('--scheme', dest='scheme', default="horst", help="Scheme") 24 parser$add_argument('--scheme', dest='scheme', default="horst", help="Scheme")
25 parser$add_argument('--mode', dest='mode', default="regression", help="Mode")
26 parser$add_argument('--maxiter', dest='maxiter', type='integer', default=100, 25 parser$add_argument('--maxiter', dest='maxiter', type='integer', default=100,
27 help="Maximum number of iterations") 26 help="Maximum number of iterations")
28 parser$add_argument('--scale', dest='scale', action="store_true", 27 parser$add_argument('--scale', dest='scale', action="store_true",
29 help="Each block is standardized to zero means and unit variances") 28 help="Each block is standardized to zero means and unit variances")
30 parser$add_argument('--check_missing_values', dest='check_missing_values', action="store_true", 29 parser$add_argument('--check_missing_values', dest='check_missing_values', action="store_true",
52 print(args$ncomp) 51 print(args$ncomp)
53 print("Compute correlation between all blocks:") 52 print("Compute correlation between all blocks:")
54 print(args$correlation) 53 print(args$correlation)
55 print("Scheme:") 54 print("Scheme:")
56 print(args$scheme) 55 print(args$scheme)
57 print("Mode:")
58 print(args$mode)
59 print("Max nb of iterations:") 56 print("Max nb of iterations:")
60 print(args$maxiter) 57 print(args$maxiter)
61 print("Scale:") 58 print("Scale:")
62 print(args$scale) 59 print(args$scale)
63 print("Check for missing values:") 60 print("Check for missing values:")
163 Y = Y, 160 Y = Y,
164 ncomp = args$ncomp, 161 ncomp = args$ncomp,
165 keepX = keepX, 162 keepX = keepX,
166 design = design, 163 design = design,
167 scheme = args$scheme, 164 scheme = args$scheme,
168 mode = args$mode,
169 scale = args$scale, 165 scale = args$scale,
170 init = args$init, 166 init = args$init,
171 tol = args$tol, 167 tol = args$tol,
172 max.iter = args$maxiter, 168 max.iter = args$maxiter,
173 near.zero.var = args$nearzerovar, 169 near.zero.var = args$nearzerovar,