Mercurial > repos > ppericard > viscorvar

comparison viscorvar_circlecor.xml @ 5:88c1fd2ac110 draft default tip

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"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 21d09ff286a496ff475f32626d88dd42423ae663"
author ppericard
date Tue, 07 Sep 2021 10:40:08 +0000
parents d4e9f7546dfa
children
comparison
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4:d4e9f7546dfa 5:88c1fd2ac110
24 --y_max ${y_max} 24 --y_max ${y_max}
25 25
26 --output_var ${output_var} 26 --output_var ${output_var}
27 --output_pdf ${output_pdf} 27 --output_pdf ${output_pdf}
28 28
29 @COMMAND_LOG_EXIT@
30
31 ]]></command> 29 ]]></command>
32 <inputs> 30 <inputs>
33 <param name="input_rdata" type="data" format="rdata" 31 <param name="input_rdata" type="data" format="rdata"
34 label="Input RData file" 32 label="Input RData file"
35 help="this is the RData output file from the matCorAddVar function"/> 33 help="this is the RData output file from the matCorAddVar function"/>
36 <param name="blocks_vec_list" type="data" format="tabular" 34 <param name="blocks_vec_list" type="data" format="tabular"
37 label="List of blocks vector." 35 label="List of blocks vector."
38 help="output *_blocks_comb.tsv file from matCorAddVar."/> 36 help="output *_blocks_comb.tsv file from the matCorAddVar function."/>
39 <param name="select_blocks" type="select" 37 <param name="select_blocks" type="select"
40 label="Blocks" 38 label="Blocks"
41 help="each element of List of blocks vector contain blocks for which selected variables can 39 help="each element of List of blocks vector contain blocks for which selected variables can
42 be visualized in the correlation circle"> 40 be visualized in the correlation circle">
43 <options from_dataset="blocks_vec_list"> 41 <options from_dataset="blocks_vec_list">
46 <filter type="sort_by" name="sorted_value" column="0"/> 44 <filter type="sort_by" name="sorted_value" column="0"/>
47 </options> 45 </options>
48 </param> 46 </param>
49 <param name="responses_var_list" type="data" format="tabular" 47 <param name="responses_var_list" type="data" format="tabular"
50 label="List of response variables." 48 label="List of response variables."
51 help="output *_response_var.tsv file from matCorAddVar"/> 49 help="output *_response_var.tsv file from the matCorAddVar function"/>
52 <param name="select_responses_var" type="select" display="checkboxes" 50 <param name="select_responses_var" type="select" display="checkboxes"
53 multiple="true" label="Response variables" 51 multiple="true" label="Response variables"
54 help="choose the response variables which will be plotted in the correlation circle"> 52 help="choose the response variables which will be plotted in the correlation circle">
55 <!-- <param name="select_responses_var" type="select" multiple="true" label="Response variables"> --> 53 <!-- <param name="select_responses_var" type="select" multiple="true" label="Response variables"> -->
56 <options from_dataset="responses_var_list"> 54 <options from_dataset="responses_var_list">
87 85
88 ----------- 86 -----------
89 Description 87 Description
90 ----------- 88 -----------
91 89
92 This tool allows visualizing variables of omics datasets which are correlated with 90 This tool allows visualizing variables of omics datasets which are correlated with response variables thanks to correlation circles. The determination of the omics
93 the response variables thanks to correlation circles. The determination of the omics 91 datasets which can be visualized is made by the matCorAddVar tool. This tool performs
94 datasets which can be visualized is made by the tool matCorAddVar. This tool performs
95 a zoom in a rectangle to retrieve omics datasets variables which are correlated with a 92 a zoom in a rectangle to retrieve omics datasets variables which are correlated with a
96 response variable. 93 response variable.
97 94
98 ----------------- 95 -----------------
99 Workflow position 96 Workflow position
100 ----------------- 97 -----------------
101 98
124 +-----------------------------------------------------------+-----------+ 121 +-----------------------------------------------------------+-----------+
125 | Parameter : num + label | Format | 122 | Parameter : num + label | Format |
126 +===========================================================+===========+ 123 +===========================================================+===========+
127 | 1 : Rdata visCorVar.matCorAddVar output | rdata | 124 | 1 : Rdata visCorVar.matCorAddVar output | rdata |
128 +-----------------------------------------------------------+-----------+ 125 +-----------------------------------------------------------+-----------+
129 | 2 : ``*``_blocks_comb.tsv visCorVar.matCorAddVar output | tabular | 126 | 2 : \*_blocks_comb.tsv visCorVar.matCorAddVar output | tabular |
130 +-----------------------------------------------------------+-----------+ 127 +-----------------------------------------------------------+-----------+
131 | 3 : ``*``_response_var.tsv visCorVar.matCorAddVar output | tabular | 128 | 3 : \*_response_var.tsv visCorVar.matCorAddVar output | tabular |
132 +-----------------------------------------------------------+-----------+ 129 +-----------------------------------------------------------+-----------+
133 130
134 ---------- 131 ----------
135 Parameters 132 Parameters
136 ---------- 133 ----------
143 140
144 viscorvar_circlecor.pdf 141 viscorvar_circlecor.pdf
145 Correlation circle pdf file 142 Correlation circle pdf file
146 143
147 viscorvar_circlecor_selected_var.tsv 144 viscorvar_circlecor_selected_var.tsv
148 List of variables selected in the correlation circle 145 List of selected variables which are contained in a rectangle of the correlation circle
149 146
150 ]]></help> 147 ]]></help>
151 148
152 <expand macro="citations" /> 149 <expand macro="citations" />
153 150